View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13890_low_4 (Length: 459)
Name: NF13890_low_4
Description: NF13890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13890_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 47807522 - 47807953
Alignment:
| Q |
18 |
attaattgtcttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgata |
117 |
Q |
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| T |
47807522 |
attaattgtcttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaatactggcttgtttccgaaaataactgttgtaagttgtatgata |
47807621 |
T |
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| Q |
118 |
catgaagaaaaaatgttttagctttcgaaggacgattatctgaaacagcaattgaaaatagtgaaaattagtgtgatccaaaataacattcttactactt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807622 |
catgtagaaaaaatgttttagctttcgaaggacgcttatctgaaacagcaattgaaaatagtgaaaattagtgtgatccaaaataacattcttactactt |
47807721 |
T |
|
| Q |
218 |
attcttgtagcagtttgacagtaaaaccgtgtcattgttttaagttgtcattcggcgactatcgtgacattttgaattgnnnnnnnnnnnnnnnnactta |
317 |
Q |
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| T |
47807722 |
attcttgtagcagtttgacagtaaaaccgtgtcattgttttaagttgtcattcggcgactatcgtgacacgttgaattgtttttattttatttttactta |
47807821 |
T |
|
| Q |
318 |
aatatatagcggaaaatttgaactactttgtttccctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatataacaaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807822 |
aatatatagcggaaaatttgaactactttgtttccctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatataacaaaac |
47807921 |
T |
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| Q |
418 |
atgtattcattcttggctctttacttgttcat |
449 |
Q |
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| T |
47807922 |
atgtattcattcttggctctttacttgttcat |
47807953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 47805085 - 47805204
Alignment:
| Q |
317 |
aaatatatagcggaaaatttgaactactttgtttccctgtctgcattggcaggtggattttcaagagaaggctacaagtcttcacgaggatataacaaaa |
416 |
Q |
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|||||||||||||| |||| |||| |||| |||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47805085 |
aaatatatagcggatgattttaacttcttt-tttccctgctggcattggaaggaggatcttcaagagaaggctacaagtcttcacgaggatataacgaaa |
47805183 |
T |
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| Q |
417 |
catgtattcattcttggctct |
437 |
Q |
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|||||||||||||||| |||| |
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| T |
47805184 |
catgtattcattcttgactct |
47805204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 47804961 - 47805063
Alignment:
| Q |
18 |
attaattgtcttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgata |
117 |
Q |
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||||||||| |||||||||| ||||||||| || |||||||| ||| |||||||||| ||||| ||| | || ||| ||||||||||||||||||||||| |
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| T |
47804961 |
attaattgtgttgttttacttacagcaagattgtgaggatttacggaaaaaagtgaaaactggattgctcccaaaattaactgttgtaagttgtatgata |
47805060 |
T |
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| Q |
118 |
cat |
120 |
Q |
| |
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||| |
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|
| T |
47805061 |
cat |
47805063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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