View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13890_low_5 (Length: 268)
Name: NF13890_low_5
Description: NF13890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13890_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 260
Target Start/End: Original strand, 259758 - 259986
Alignment:
| Q |
32 |
tcttcttcttgttagtaattgtaccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
131 |
Q |
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| T |
259758 |
tcttcttcttgttggtaattataccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
259857 |
T |
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| Q |
132 |
gattgaattacgtttcagatctaaaataaaacccataannnnnnnnaaaccttttcatcttttcagatgaagtttcagatctaaaatcaataacccagaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
259858 |
gattgaattacgtttcagatctaaaataaaacccataattttttttaaaccttttcatcttttcagatgaagtttcagatcaaaaatcaataacccagaa |
259957 |
T |
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| Q |
232 |
tttattaaatctatttatctcttcatctc |
260 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
259958 |
tttattaaatgtatttatctcttcatctc |
259986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 32 - 260
Target Start/End: Original strand, 27225630 - 27225857
Alignment:
| Q |
32 |
tcttcttcttgttagtaattgtaccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
131 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27225630 |
tcttcttcttgttggtaattataccatggcttcaacatctaattcctcgtatgagtttgtggagcatggttgtggagatgacgtggtttgtttctaaggg |
27225729 |
T |
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| Q |
132 |
gattgaattacgtttcagatctaaaataaaacccataannnnnnnnaaaccttttcatcttttcagatgaagtttcagatctaaaatcaataacccagaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27225730 |
gattgaattacgtttcagatctaaaataaaacccataa-tttttttaaaccttttcatcttttcagatgaagtttcagatcaaaaatcaataacccagaa |
27225828 |
T |
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| Q |
232 |
tttattaaatctatttatctcttcatctc |
260 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
27225829 |
tttattaaatgtatttatctcttcatctc |
27225857 |
T |
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