View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13891_high_1 (Length: 313)

Name: NF13891_high_1
Description: NF13891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13891_high_1
NF13891_high_1
[»] chr5 (1 HSPs)
chr5 (1-297)||(14121117-14121413)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 14121413 - 14121117
Alignment:
Q  1 tgcttaaactccagtacttgctcaccaattgtaagtatagccaaaaaacataagtggtcatacaacactacaaaacgacacacttgtatggtattggcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14121413 tgcttaaactccagtacttgctcaccaattgtaagtatagccaaaaaacataagtggtcatacaacactacaaaacgacacacttgtatggtattggcac 14121314  T
Q  101 aatcaatgtctggtagatacccatactttaggtcgtgttggctcgatcaacgactcgtgtgttttttaattaaggaaaagaaagggtcaaaaatgaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14121313 aatcaatgtctggtagatacccatactttaggtcgtgttggctcgatcaacgactcgtgtgttttttaattaaggaaaagaaagggtcaaaaatgaaatt 14121214  T
Q  201 gaaaatgataagtgggnnnnnnngttaccacatatatttaagaaaaagaaaatgtttgattaaagatctatgtggggatgagaaaggagaaccacag 297  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14121213 gaaaatgataagtgggaaaaaaagttaccacatatatttaagaaaaagaaaatgtttgattaaagatctatgtggggatgagaaaggagaaccacag 14121117  T

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