View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13891_low_2 (Length: 228)

Name: NF13891_low_2
Description: NF13891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13891_low_2
NF13891_low_2
[»] scaffold0062 (8 HSPs)
scaffold0062 (13-201)||(3966-4155)
scaffold0062 (29-79)||(70156-70206)
scaffold0062 (109-202)||(41375-41468)
scaffold0062 (29-79)||(58022-58072)
scaffold0062 (158-202)||(4172-4216)
scaffold0062 (109-173)||(58983-59047)
scaffold0062 (109-173)||(71095-71159)
scaffold0062 (26-77)||(71018-71069)
[»] chr2 (5 HSPs)
chr2 (29-79)||(15721599-15721649)
chr2 (29-79)||(15709110-15709160)
chr2 (109-173)||(15710071-15710135)
chr2 (109-173)||(15722538-15722602)
chr2 (26-77)||(15722461-15722512)
[»] chr8 (2 HSPs)
chr8 (29-79)||(18688835-18688885)
chr8 (109-173)||(18689794-18689858)


Alignment Details
Target: scaffold0062 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 3966 - 4155
Alignment:
Q  13 aaagtaattagaaaatttaaatataattgatattagtctttgaaatatctacaaagtaaatatataannnnnnnnagaggagttaacatatactactata 112  Q
    ||||||||||  ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  3966 aaagtaattatgaaatttaaatataattgatattaatctttaaaatatctacaaagtaaatatataattttttttagaggagttaacatatactactata 4065  T
Q  113 atttgataacgtgtaaaacataattggtt-gttgtctttcaatttattatttctcacataaagtcatggtcttctattagttatttttat 201  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4066 atttgataacgtgtaaaatataaatggtttgttgtctttcaatttattatttctcacataaagtcatggtcttctattagttattgttat 4155  T

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Target: scaffold0062; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 70156 - 70206
Alignment:
Q  29 ttaaatataattgatattagtctttgaaatatctacaaagtaaatatataa 79  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  70156 ttaaatataattgatattaatctttaaaatatctacaaagtaaatatataa 70206  T

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Target: scaffold0062; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 41375 - 41468
Alignment:
Q  109 tataatttgataacgtgtaaaacataattggttgttgtctttcaatttattatttctcacataaagtcatggtcttctattagttatttttatt 202  Q
    ||||| ||||||||||||| || ||||   || |||||||||||||||||||||||||| |||||||||||| ||| || || ||||| |||||    
T  41375 tataagttgataacgtgtagaatataaaccgtagttgtctttcaatttattatttctcaaataaagtcatggccttttaatatttattattatt 41468  T

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Target: scaffold0062; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 58022 - 58072
Alignment:
Q  29 ttaaatataattgatattagtctttgaaatatctacaaagtaaatatataa 79  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  58022 ttaaatataattgatattaatctttaaaatatctacgaagtaaatatataa 58072  T

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Target: scaffold0062; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 4172 - 4216
Alignment:
Q  158 ttatttctcacataaagtcatggtcttctattagttatttttatt 202  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  4172 ttatttctcacataaagtcatggtcttttattagttattattatt 4216  T

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Target: scaffold0062; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 58983 - 59047
Alignment:
Q  109 tataatttgataacgtgtaaaacataattggttgttgtctttcaatttattatttctcacataaa 173  Q
    ||||||| |||||||||||||| |||| | |  |||||||||||| |||||||||||||||||||    
T  58983 tataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 59047  T

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Target: scaffold0062; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 71095 - 71159
Alignment:
Q  109 tataatttgataacgtgtaaaacataattggttgttgtctttcaatttattatttctcacataaa 173  Q
    ||||||| |||||||||||||| |||| | |  |||||||||||| |||||||||||||||||||    
T  71095 tataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 71159  T

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Target: scaffold0062; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 71018 - 71069
Alignment:
Q  26 aatttaaatataattgatattagtctttgaaatatctacaaagtaaatatat 77  Q
    |||||||||||||||||  ||| ||||| ||||||| |||||||||||||||    
T  71018 aatttaaatataattgaagttaatctttaaaatatcaacaaagtaaatatat 71069  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 15721599 - 15721649
Alignment:
Q  29 ttaaatataattgatattagtctttgaaatatctacaaagtaaatatataa 79  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  15721599 ttaaatataattgatattaatctttaaaatatctacaaagtaaatatataa 15721649  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 15709110 - 15709160
Alignment:
Q  29 ttaaatataattgatattagtctttgaaatatctacaaagtaaatatataa 79  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  15709110 ttaaatataattgatattaatctttaaaatatctacgaagtaaatatataa 15709160  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 15710071 - 15710135
Alignment:
Q  109 tataatttgataacgtgtaaaacataattggttgttgtctttcaatttattatttctcacataaa 173  Q
    ||||||| |||||||||||||| |||| | |  |||||||||||| |||||||||||||||||||    
T  15710071 tataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 15710135  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 15722538 - 15722602
Alignment:
Q  109 tataatttgataacgtgtaaaacataattggttgttgtctttcaatttattatttctcacataaa 173  Q
    ||||||| |||||||||||||| |||| | |  |||||||||||| |||||||||||||||||||    
T  15722538 tataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 15722602  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 15722461 - 15722512
Alignment:
Q  26 aatttaaatataattgatattagtctttgaaatatctacaaagtaaatatat 77  Q
    |||||||||||||||||  ||| ||||| ||||||| |||||||||||||||    
T  15722461 aatttaaatataattgaagttaatctttaaaatatcaacaaagtaaatatat 15722512  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 18688835 - 18688885
Alignment:
Q  29 ttaaatataattgatattagtctttgaaatatctacaaagtaaatatataa 79  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  18688835 ttaaatataattgatattaatctttaaaatatctacgaagtaaatatataa 18688885  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 18689794 - 18689858
Alignment:
Q  109 tataatttgataacgtgtaaaacataattggttgttgtctttcaatttattatttctcacataaa 173  Q
    ||||||| |||||||||||||| |||| | |  |||||||||||| |||||||||||||||||||    
T  18689794 tataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 18689858  T

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