View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_high_3 (Length: 555)
Name: NF13892_high_3
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_high_3 |
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| [»] scaffold0057 (2 HSPs) |
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| [»] scaffold0884 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 10050568 - 10050071
Alignment:
| Q |
1 |
gtaagcttccaaagctaaggatatttagaaggctagctatgcgaggtttcgtttcatgattacttacacatgccctattgaaattgaccaagagatttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||||||| |
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| T |
10050568 |
gtaagcttccaaagctaaggatatttagaaggctagctatgcgaggtttcgttttctgatttcttacacatgccctcttggaattgaccaagggatttta |
10050469 |
T |
|
| Q |
101 |
aatatatgataaggtgttttagaataattgaaaacgtatgacatatattaagggtaataatttggagttatgaggaaatcaaaatggaaaatattatagt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
10050468 |
aatatatgataaggtgttgtagaataattgaaaacgtaagacatatattaagggtaataatttggagttatgaggaaatcaaaatgaagaatattatagt |
10050369 |
T |
|
| Q |
201 |
attatggttgactttatctaaatcaagaagacaatcaatggcttctatttggtcaaaatcataaggataggaaaagattatacacttgtaatgagagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10050368 |
attatggttgactttatctaaatcaagaagacaatcaatggcttctatttggtcaaaatcataaggataggaaaagattatacacttgtaatgagagaaa |
10050269 |
T |
|
| Q |
301 |
gagagaaaccgtgggatgaaagccaacataaatggttttcatggaattttggcaataagaggagacaaattgatcaatctcttttattttgcataaacta |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
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| T |
10050268 |
gagagaaaccgtgggatgaaagccaacaaaaatggttttcattgaattttggcaataagaggaaacaaattgatcaatctcttttatttgacataaatta |
10050169 |
T |
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| Q |
401 |
cttggtggaatagatttaaaatggcgaaggattaatattcttaattcaggcaagtaactattcttcaaacttggtcaaaggatcaaggctaattaaat |
498 |
Q |
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| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||| |||||| |
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| T |
10050168 |
cgtcgtggaatagatttaaaatggggaaggattaatattcttaattcaggcaaataattgttcttcaaacttggtcaaaggatcaaagctacttaaat |
10050071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 498 - 537
Target Start/End: Complemental strand, 10037374 - 10037335
Alignment:
| Q |
498 |
tttgtttaatgttggaaggaagtgcatagacggagtcatt |
537 |
Q |
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| T |
10037374 |
tttgtttaatgttggaaggaagtgcatagacggagtcatt |
10037335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 76674 - 76950
Alignment:
| Q |
1 |
gtaagcttccaaagctaaggatatttagaaggctagctatgcgaggtttcgtttcatgattacttacacatgccctattgaaattgaccaagagatttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
76674 |
gtaagcttccaaagctaaggatatttagaaggctagctatgagaggtttcgttttctgatttcttacacatgccctattggaattgaccaagggatttta |
76773 |
T |
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| Q |
101 |
aatatatgataaggtgttttagaataattgaaaacgtatgacatatattaagggt-aataatttggagttatgaggaaatcaaaatggaaaatattatag |
199 |
Q |
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| T |
76774 |
aatatatgatagggtgttgtagaataattgaaaacgtatgacatatattaagggtgaataatttggagttatgaggaaatcaaaatggagaatattatag |
76873 |
T |
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| Q |
200 |
tattatggttgactttatctaaatcaagaagacaatcaatggcttctatttggtcaaaatcataaggataggaaaag |
276 |
Q |
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| T |
76874 |
tattatggttgacttcatctaaatcaagaagacattcaatggcttctatttggtcaaaatcataaggataggaaaag |
76950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 267 - 491
Target Start/End: Original strand, 77506 - 77730
Alignment:
| Q |
267 |
ataggaaaagattatacacttgtaatgagagaaagagagaaaccgtgggatgaaagccaacataaatggttttcatggaattttggcaataagaggagac |
366 |
Q |
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| T |
77506 |
ataggaaaagattatacacttgtaatgagagaaagagagaaaccgtgggatgaaagccaacaaaaatggttttcatgggattttgtcaataagaggtaag |
77605 |
T |
|
| Q |
367 |
aaattgatcaatctcttttattttgcataaactacttggtggaatagatttaaaatggcgaaggattaatattcttaattcaggcaagtaactattcttc |
466 |
Q |
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||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||| |
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| T |
77606 |
aaattgatcaatctcttttatttgacataaattacgtggtggaatagatttaaaatggggaaggattaatattcttaattcaggcaaataattgttcttc |
77705 |
T |
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| Q |
467 |
aaacttggtcaaaggatcaaggcta |
491 |
Q |
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| T |
77706 |
aaacttggtcaaaggatcaaggcta |
77730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0884 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0884
Description:
Target: scaffold0884; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 1643 - 1702
Alignment:
| Q |
479 |
aggatcaaggctaattaaatt-tgtttaatgttggaaggaagtgcatagacggagtcatt |
537 |
Q |
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| T |
1643 |
aggatcaaggctaattaaattatgtttaatgttggaaggaagtgcatagacggagtcatt |
1702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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