View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_high_4 (Length: 549)
Name: NF13892_high_4
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Original strand, 2588154 - 2588685
Alignment:
| Q |
18 |
acctgatacaatattaggttcaattgtatcgtcattaatgcaacactgcggtccatcacaaaggaaacatcctttggaaagcggcattcctccaccatgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588154 |
acctgatacaatattaggttcaattgtatcgtcattaatgcaacactgcgatccaccacaaaggaaacatcctttggaaagcggcattcctccaccatgg |
2588253 |
T |
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| Q |
118 |
tggccaacagggaacgaaccatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaaagccgcacgatctgaagaaggtttgga |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588254 |
tggccaacagggaacgaatcatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaaagccgcacgatctgaagaaggtttgga |
2588353 |
T |
|
| Q |
218 |
aagtttgtgttttgacggccattatcaaacacatgtctccaaatattcagaagattaagagtattgctagacgttcgaggagcctgcaaaatagattcac |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588354 |
aagtttgtgttttgacggccattatcaaacatatgtctccaaatattcagaagattaagagtattgctagacgttcgaggagcctgcaaaatagattcac |
2588453 |
T |
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| Q |
318 |
tgctaaggatacagctatttggcttgctgttattgattatgaagaaagattggcaagagaaatgtatcctgaatcattcttaaattcttcttgtgttggt |
417 |
Q |
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| T |
2588454 |
tgctaaggatacagctatttggcttgctgttattgattatgaagaaagattggcaagagaaatgtatcctgaatcattcttaaaatcttcttgtgttggt |
2588553 |
T |
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| Q |
418 |
gaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgagcacaatctaggaaaacctttatcatcatgtgagggttctgatacca |
517 |
Q |
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| T |
2588554 |
gaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgatgagcacaatctagaaaaacctttatcatcatgtgagggttctgatacca |
2588653 |
T |
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| Q |
518 |
acatggttcatcaacttgaagaaactaattct |
549 |
Q |
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| T |
2588654 |
acatggttcatcaacttgaagaaactaattct |
2588685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 1482477 - 1482743
Alignment:
| Q |
18 |
acctgatacaatattaggttcaattgtatcgtcattaatgcaacactgcggtccatcacaaaggaaacatcctttggaaagcggcattcctccaccatgg |
117 |
Q |
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|||||| |||| |||||||||| || |||| |||| ||||||||| |||| |||| ||||||| | | ||||||| ||||| | |||||||||||||||| |
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| T |
1482477 |
acctgacacaacattaggttcacttttatcatcatgaatgcaacattgcgatccaccacaaagaagatatcctttagaaagagacattcctccaccatgg |
1482576 |
T |
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| Q |
118 |
tggccaacagggaacgaaccatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaaagccgcacgatctgaag-aaggtttgg |
216 |
Q |
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| T |
1482577 |
tggccatcaggaaaagaatcatggtggaatgaaatggaatttagcgaagatctcgtcccaccaccttgcataaagtcatatgatttgtagaaaggtttga |
1482676 |
T |
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| Q |
217 |
aaagtttgtgttttgacggccattatcaaacacatgtctccaaatattcagaagattaagagtattg |
283 |
Q |
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| T |
1482677 |
aaattttatgttttgaaggttgttatcaaacacatgtctcctaacattcagaaaattaggattattg |
1482743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 4154029 - 4153802
Alignment:
| Q |
30 |
attaggttcaattgtatcgtcattaatgcaacactgcggtccatcacaaaggaaacatcctttggaaagcggcattcctccaccatggtggccaacaggg |
129 |
Q |
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| T |
4154029 |
attaggttcacttttatcatcatgaatgcaacattgtgatccaccacaaaggagatatccttag-aaataggcattcctccaccatgatagccatcagga |
4153931 |
T |
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| Q |
130 |
aacgaaccatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaaagccgcacgatctgaag-aaggtttggaaagtttgtgtt |
228 |
Q |
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| T |
4153930 |
aaagaattatgatgaaatgaaatggaatttagtgaagatctcgtcccaccaccttatagaaagccgcatgatttgaagaaaggtttggaaaatttatgtt |
4153831 |
T |
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| Q |
229 |
ttgacggccattatcaaacacatgtctcc |
257 |
Q |
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| T |
4153830 |
ttggcagatgttatcaaacacatgtctcc |
4153802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 91 - 266
Target Start/End: Original strand, 41334735 - 41334910
Alignment:
| Q |
91 |
ttggaaagcggcattcctccaccatggtggccaacagggaacgaaccatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaa |
190 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||| || ||| |||||||| | || ||| | ||| ||||||| || |
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| T |
41334735 |
ttggaaaaaggcattcctccaccatggtggccaacagggaaagaatcatggaggaaagagatgagatttagtgaagaacctggcctacccccttatagaa |
41334834 |
T |
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| Q |
191 |
agccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctccaaatattca |
266 |
Q |
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| T |
41334835 |
agccgcataatataaaaaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttca |
41334910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 266
Target Start/End: Original strand, 20920114 - 20920289
Alignment:
| Q |
91 |
ttggaaagcggcattcctccaccatggtggccaacagggaacgaaccatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaa |
190 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||| || ||| |||||||| | || ||| | ||| ||||||| || |
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| T |
20920114 |
ttggaaaaaggcattcctccaccatggtggccaacagggaaagaatcatggaggaatgagatgagatttagtgaagaacctggcctacccccttatagaa |
20920213 |
T |
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| Q |
191 |
agccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctccaaatattca |
266 |
Q |
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| T |
20920214 |
agccgcataatctaaagaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttca |
20920289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 91 - 266
Target Start/End: Original strand, 20901651 - 20901826
Alignment:
| Q |
91 |
ttggaaagcggcattcctccaccatggtggccaacagggaacgaaccatggtggatcgaaatgggatttagtaaggatattggtccaccaccttataaaa |
190 |
Q |
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| T |
20901651 |
ttggaaaaaggcattcctccaccatggtggccaacagggaaagaatcatggaggaatgagatgagatttagtgaagaacctggccttcccccttatagaa |
20901750 |
T |
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| Q |
191 |
agccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctccaaatattca |
266 |
Q |
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| T |
20901751 |
agccgcataatctaaagaaggtttggaaggtttatgttttggcagcggttattaaacatatgtctcctaatgttca |
20901826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 38052459 - 38052541
Alignment:
| Q |
175 |
ccaccaccttataaaaagccgcacgatctgaagaaggtttggaaagtttgtgttttgacggccattatcaaacacatgtctcc |
257 |
Q |
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| T |
38052459 |
ccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttgtctcc |
38052541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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