View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_high_7 (Length: 388)
Name: NF13892_high_7
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 28004062 - 28004429
Alignment:
| Q |
1 |
atgtgaggaaatggaattgatttgtaagaaatactcaaaactgatacgtacacgggcatggtatttcgggtgcaaagaagatgaaaatgaaaaccttgaa |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28004062 |
atgtgaggaaatggaattgatttgtacgaaatactcaaaactgatacgtacacgggcatggtatttcgggtgcaaagaagatgaaaatgaaaacct-gaa |
28004160 |
T |
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| Q |
101 |
aacaatttaattgaattaatacgtaataaaattatgtttatattaccttctcagaccgagattatgatatgagatgagacgatgagaattgaacgtacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28004161 |
aacaatttaattgaattaatacgtaataaaattatgcttat-ttaccttctcagaccgagattatgatatgagatgagacgatgagaattgaacgtacat |
28004259 |
T |
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| Q |
201 |
taatgttgctgaaatggtttcttcattcgtttctaccgatgggatt-------aggaatcagatgttgtttagtgttttttcctgctcggacaatgtata |
293 |
Q |
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| T |
28004260 |
taatgttgctaaaatggtttctttattcgtttctactgatgggattaggaatcaggaatcagatgttgtttagtgtttttt-ctgctcggacaatgtata |
28004358 |
T |
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| Q |
294 |
tttcaaataccaaggtagtgaatacttatcgtaaaaatatacaactatatacagcctgtttgcctatgctt |
364 |
Q |
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| T |
28004359 |
tttcaaataccaaggtagtgaatacttattgtaaaaatatacaactatatacagcctgtctgcctctgctt |
28004429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 27994336 - 27994683
Alignment:
| Q |
1 |
atgtgaggaaatggaattgatttgtaagaaatactcaaaactgatacgtacacgggcatggtatttcgggtgcaaagaagatgaaaatgaaaaccttgaa |
100 |
Q |
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| T |
27994336 |
atgtgaggaaatggaattgatttgtaagaaatactcaaaactgatacgtacacgggcatggtattttgggtgcaaagaagatgaaaatgaa--------- |
27994426 |
T |
|
| Q |
101 |
aacaatttaattgaattaatacgtaataaaattatgtttatattaccttctcagaccgagattatgatatgagatgagacgatgagaattgaacgtacac |
200 |
Q |
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|||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
27994427 |
aacaatttaattgaattattacagaataaaattatgcttatattaccttctcagacctggattatgatatgagaagagacgatgagaattgaacatacaa |
27994526 |
T |
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| Q |
201 |
taatgttgctgaaatggtttcttcattcgtttctaccgatgggattaggaatcagatgttgtttagtgttttttcctgctcggacaatgtatatttcaaa |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| | | ||||| |||||||| |
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| T |
27994527 |
tattgttgctgaaatggtttcttcattcgtttctactgatgggactaggaatcagatgttgtttagtgttttttcatgcttaggctatgtagatttcaaa |
27994626 |
T |
|
| Q |
301 |
taccaaggtagtgaatacttatcgtaaaaatatacaactatatacagcctgtttgcc |
357 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||| || |||| |||| |
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| T |
27994627 |
taccaaagtagtgaatacttatcgtaaaaatatacaacaatatatagtctgtctgcc |
27994683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 28004693 - 28004753
Alignment:
| Q |
291 |
atatttcaaataccaaggtagtgaatacttatcgtaaaaatatacaactatatacagcctg |
351 |
Q |
| |
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||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28004693 |
atatttcaaatcctaagatagtgaatacttatcgtaaaagtatacaactatatacagcctg |
28004753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 27995243 - 27995304
Alignment:
| Q |
291 |
atatttcaaataccaaggtagtgaatacttatcgtaaaaatatacaactatatacagcctgt |
352 |
Q |
| |
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|||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| ||||||| |
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| T |
27995243 |
atatttcaaatatcaagaaagtaaatacttatcgtaaaaatatacaacaatatatagcctgt |
27995304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 28005329 - 28005395
Alignment:
| Q |
291 |
atatttcaaataccaaggtagtgaatacttatcgtaaaaatatacaactatatacagcctgtttgcc |
357 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||||| ||||| ||| |||||||| |
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| T |
28005329 |
atatttcaaatcccaagacggtgaatacttatcataaaaatatacaacaatatatagcatgtttgcc |
28005395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 28005021 - 28005068
Alignment:
| Q |
291 |
atatttcaaataccaaggtagtgaatacttatcgtaaaaatatacaac |
338 |
Q |
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|||||| |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
28005021 |
atattttaaattccaagacagtgaatacttatcgtaaaaatatacaac |
28005068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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