View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_low_1 (Length: 621)
Name: NF13892_low_1
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_low_1 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 8349155 - 8349622
Alignment:
| Q |
1 |
ccatgtctttccagcctccaaatacgctcgtccggccccacaaagaggaaaaggggtacagctgaactgctgaagcacatctaaattccannnnnnnatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
8349155 |
ccatgtctttccagcctccaaatacgctcgtccggccccacaaagaggaaaaggggtacagctgaactgctgaagcacatctaatttccacttttttatc |
8349254 |
T |
|
| Q |
101 |
cattcggcagcaaatcatggacggtaagttgctgattcggtacaatgtgcatcaatggttgtgacacgctcttgtttgctaaccaactgtcatgaaatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
8349255 |
cattcggcagcaaatcatggacggtaaattgctgattcggtacaatgtgcatcaatggttgtgacacgctcttgtttactaaccaattgtcatgaaatac |
8349354 |
T |
|
| Q |
201 |
ccggacgttctccccactaccaaccttccattttttaccaaacttcacaattgtaagagcttgttgaatgctcttgtttcgtaagataagtttnnnnnnn |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8349355 |
ccggacgttctccccactaccaaccttccattttttaccaaacttcacaattgtaagagcttattgaatgctcttgtttcgtaagataagtttaacaaaa |
8349454 |
T |
|
| Q |
301 |
ctctcttcaaaacacattagttcaagtgatttatgttgggtgtggccgtgtgggtcactgctgctgagtgatatagatattatgaatagaattttagtct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8349455 |
ttctcttcaaaacacattagttcaagtgatttatgttgggtgtggccgtgtgggtcactgctgctgagtgatatagatattatgaatagaattttagtct |
8349554 |
T |
|
| Q |
401 |
tggtatttctttctagctattatatttctacaattttacaaccattgttgatattcgtataactaaaa |
468 |
Q |
| |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8349555 |
tgggatttctttctagctaatatatttctacaattttacaaccattgttgatattcgtataactaaaa |
8349622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 100 - 481
Target Start/End: Complemental strand, 11994025 - 11993658
Alignment:
| Q |
100 |
ccattcggcagcaaatcatggacggtaagttgctgattcggtacaatgtgcatcaatggttgtgacacgctcttgtttgct-aaccaactgtcatgaaat |
198 |
Q |
| |
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|||||| |||||||||| |||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||| |||||| ||| |
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| T |
11994025 |
ccattctgcagcaaatctcggactttaagttgctgattcagtacaatgtgcatcaatggttgttccatgctcttgtttgctaaaccaattgtcataaaac |
11993926 |
T |
|
| Q |
199 |
acccggacgttctccccactaccaaccttccattttttaccaaacttcacaattgtaagagcttgttgaatgctcttgtttcgtaagataagtttnnnnn |
298 |
Q |
| |
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||||||| ||||| |||||||||||||||||| || |||| |||| |||||| || ||||| |||||||||||| ||| |||||| |||||| |
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| T |
11993925 |
acccggatattctctccactaccaaccttccatcttgtacctcgcttcgcaattggaatagcttcttgaatgctctt-ttttgtaagagaagtttaaaaa |
11993827 |
T |
|
| Q |
299 |
nnctctcttcaaaacacattagttcaagtgatttatgttgggtgtggccgtgtgggtcactgctgctgagtgatatagatat-tatgaatagaattttag |
397 |
Q |
| |
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|| ||||| ||| |||||||||||||||||||| || | |||||||| || || ||||| | || || ||||||| ||||||| |
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| T |
11993826 |
aactatcttccaaaaacattagttcaagtgatttacatttg----------gtgggtca---ctactaagtgagaaagtcatccatgaata--attttag |
11993742 |
T |
|
| Q |
398 |
tcttggtatttctttctagctattatatttctacaattttacaaccattgttgatattcgtataactaaaacatttctacaatt |
481 |
Q |
| |
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|||||| |||| ||| |||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |
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| T |
11993741 |
tcttgggatttgtttgtagctaaaatatttctacaattttaccaccactgttgatatgtgtataactaaaacatttctacaatt |
11993658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 499
Target Start/End: Original strand, 44614593 - 44614647
Alignment:
| Q |
445 |
ttgttgatattcgtataactaaaacatttctacaatttttattgcatttctcact |
499 |
Q |
| |
|
|||||||||| || |||||||| |||||||| ||||| |||||||||||||||| |
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| T |
44614593 |
ttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcact |
44614647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 44793976 - 44793922
Alignment:
| Q |
445 |
ttgttgatattcgtataactaaaacatttctacaatttttattgcatttctcact |
499 |
Q |
| |
|
|||||||||| || |||||||| |||||||| ||||| |||||||||||||||| |
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|
| T |
44793976 |
ttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcact |
44793922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 27253 - 27216
Alignment:
| Q |
460 |
taactaaaacatttctacaatttttattgcatttctca |
497 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |
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| T |
27253 |
taactaaagcatttctacaatttgtattgcatttctca |
27216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 171539 - 171576
Alignment:
| Q |
460 |
taactaaaacatttctacaatttttattgcatttctca |
497 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |
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|
| T |
171539 |
taactaaagcatttctacaatttgtattgcatttctca |
171576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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