View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13892_low_10 (Length: 355)
Name: NF13892_low_10
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_low_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 355
Target Start/End: Original strand, 42543561 - 42543911
Alignment:
| Q |
11 |
catcatcacacaaacaacaaaaaacctaatttgatgtnnnnnnn-caaacaaagttagcagaaagaaacttactttgaagctgtttgtccatgtacctat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42543561 |
catcatcacacaaacaacaaaaaacctaatttgatgtaaaaaaaacaaacaaagttagcagaaagaaacttactttgaagctgtttgtccatgtacctat |
42543660 |
T |
|
| Q |
110 |
cgaaaccccaaattaaacgaagnnnnnnnnng-----catattagtattgatcaagtgtagtagaaattcaaaatcgacaaaaaattgtaatgataaaac |
204 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42543661 |
cgaaaccccaaattaaaagaagaagaaaaaaaaaaaacatattagtattgatcaagtgtagtagaaattcaaaatcgacaaaaaatagtaatgataaaac |
42543760 |
T |
|
| Q |
205 |
gaattgaaaagtgtgaacaatgcttacttcttcaaatctggtggctgccctgacctactcatggtgaattcagggattgaaagaacaaacgtagaacgaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42543761 |
gaattgaaaagtgtgaacaatgcttacttcttcaaatctggtggctgccctgacctactcatggtgaattcaggaattgaaagaacaaacgtagaacgaa |
42543860 |
T |
|
| Q |
305 |
gatgatttggagggtactcgttcaaaaatttctaaaccacaaccctaactt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42543861 |
gatgatttggagggtactcgttcaaaaatttctaaaccacaaccctaactt |
42543911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 24625544 - 24625508
Alignment:
| Q |
71 |
aaagaaacttactttgaagctgtttgtccatgtacct |
107 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24625544 |
aaagaaacttactctgaagctgtttgtccatgtacct |
24625508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University