View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13892_low_14 (Length: 273)

Name: NF13892_low_14
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13892_low_14
NF13892_low_14
[»] chr4 (5 HSPs)
chr4 (9-258)||(53502020-53502269)
chr4 (65-219)||(53494963-53495117)
chr4 (65-204)||(53498936-53499075)
chr4 (65-204)||(53492631-53492770)
chr4 (80-204)||(53489313-53489437)
[»] chr7 (1 HSPs)
chr7 (44-168)||(37188607-37188731)
[»] chr3 (2 HSPs)
chr3 (80-179)||(38214351-38214450)
chr3 (80-179)||(38218570-38218669)
[»] chr8 (2 HSPs)
chr8 (86-130)||(42991128-42991172)
chr8 (83-169)||(35017756-35017842)
[»] chr6 (1 HSPs)
chr6 (68-108)||(33449605-33449645)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 53502269 - 53502020
Alignment:
Q  9 cacagagtagatgagaaatttacataatcctctgggggttccatatgatagaataagtgtgaaaatcagctgttgggtcaaaccatagatagaattgttg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53502269 cacagagtagatgagaaatttacataatcctctgggggttccatatgatagaataagtgtgaaaatcagctgctgggtcaaaccatagatagaattgttg 53502170  T
Q  109 ttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttcctagaaattcatagtctatctcatcccaagtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53502169 ttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttcctagaaattcatagtctatctcatcccaagtt 53502070  T
Q  209 ggtccttttgaagatagctgcaaacaaagaatcattttatttgttattag 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53502069 ggtccttttgaagatagctgcaaacaaagaatcattttatttgttattag 53502020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 53495117 - 53494963
Alignment:
Q  65 gtgtgaaaatcagctgttgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcac 164  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||| || |||||||| |||||||  || ||||| ||||||||  |||||||||| |    
T  53495117 gtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctc 53495018  T
Q  165 cacttacatttcctagaaattcatagtctatctcatcccaagttggtccttttga 219  Q
    |||| ||||| ||||  |||||| |||| |||||||||||| ||| |||||||||    
T  53495017 cactcacattccctaagaattcaaagtcaatctcatcccaatttgatccttttga 53494963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 53499075 - 53498936
Alignment:
Q  65 gtgtgaaaatcagctgttgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcac 164  Q
    ||||||||||| || |||||||||||||| || || |||||||| || ||||| ||||||||||| || || ||||| |||||||||||||| || ||||    
T  53499075 gtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcac 53498976  T
Q  165 cacttacatttcctagaaattcatagtctatctcatccca 204  Q
    |||| | |||||| |  |||||| |||| |||||||||||    
T  53498975 cactcaaatttcccaagaattcaaagtcaatctcatccca 53498936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 53492770 - 53492631
Alignment:
Q  65 gtgtgaaaatcagctgttgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcac 164  Q
    ||||||||||| || |||||||||||||| || || | |||||| || ||||  ||||||||||| || || ||||| || ||||||||||| || ||||    
T  53492770 gtgtgaaaatctgcagttgggtcaaaccaaaggtaaatttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcac 53492671  T
Q  165 cacttacatttcctagaaattcatagtctatctcatccca 204  Q
    |||| | |||||| |  |||||| |||| || ||||||||    
T  53492670 cactcaaatttcccaagaattcaaagtcaatttcatccca 53492631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 53489313 - 53489437
Alignment:
Q  80 gttgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttccta 179  Q
    |||||||||||||||| |||||||||||| || ||||  |||||||||||  || | ||||| || ||||  ||||| || |||||||| | |||||| |    
T  53489313 gttgggtcaaaccataaatagaattgttgctctctgtcccctttgccttgggtgtacacatttgtatgaactatgtaaggatcaccactcaaatttccca 53489412  T
Q  180 gaaattcatagtctatctcatccca 204  Q
      |||||| ||||||| ||||||||    
T  53489413 agaattcaaagtctatttcatccca 53489437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 37188731 - 37188607
Alignment:
Q  44 gggttccatatgatagaataagtgtgaaaatcagctgttgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattag 143  Q
    |||||||| | ||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||| ||||| ||||| || || ||||| |    
T  37188731 gggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattgg 37188632  T
Q  144 tgtgaaggatgtatggttcaccact 168  Q
    ||||||| |||||||| ||||||||    
T  37188631 tgtgaagaatgtatgggtcaccact 37188607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 38214351 - 38214450
Alignment:
Q  80 gttgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttccta 179  Q
    |||||||| ||||| || |||||||||||||| ||||||||||||||||||   || || || ||||| || ||||| || || ||||| ||||||||||    
T  38214351 gttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttccta 38214450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 38218570 - 38218669
Alignment:
Q  80 gttgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttccta 179  Q
    |||||||| ||||| || |||||||||||||| ||||||||||||||||||   || || || ||||| || ||||| || || ||||| ||||||||||    
T  38218570 gttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttccta 38218669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 42991172 - 42991128
Alignment:
Q  86 tcaaaccatagatagaattgttgttccctgtttcctttgccttga 130  Q
    |||||||| || |||||||||||||| ||||||||||||||||||    
T  42991172 tcaaaccagaggtagaattgttgttctctgtttcctttgccttga 42991128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 35017842 - 35017756
Alignment:
Q  83 gggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccactt 169  Q
    |||||||||||||| |||||||||||||| || || ||||| |||||| |||| |  || |||||||| || || || |||||||||    
T  35017842 gggtcaaaccataggtagaattgttgttctctattacctttaccttgagtgaagatgtttgtgtgaagaatataagggtcaccactt 35017756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 33449645 - 33449605
Alignment:
Q  68 tgaaaatcagctgttgggtcaaaccatagatagaattgttg 108  Q
    ||||||||||| |||||||||||||| ||||| ||||||||    
T  33449645 tgaaaatcagcagttgggtcaaaccaaagataaaattgttg 33449605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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