View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_low_19 (Length: 249)
Name: NF13892_low_19
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 28309471 - 28309306
Alignment:
| Q |
71 |
taaatagtatgattaaaaatattaatgttttgttgaaactgaaatataatttataatctgtgacaannnnnnn--aaagtgacttatatattagaatgaa |
168 |
Q |
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| T |
28309471 |
taaatagtatgattaaaaatattaatgttttgttgaaactgatatataatttataatctgtgacaatttttttttaaagtgacttatatattagaatgaa |
28309372 |
T |
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| Q |
169 |
tggagtagaataatattcaaattattcaccataacctcactttacaatgaataatggtgtacaaat |
234 |
Q |
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| T |
28309371 |
tggagtagaataatattcaaattcttcaccataacctcactttacaatgaataatggtgtacaaat |
28309306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 28309522 - 28309485
Alignment:
| Q |
3 |
aaaattgtactttacaaaattatcattcaaaattaaaa |
40 |
Q |
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| T |
28309522 |
aaaattatactttacaaaattatcattcaaaattaaaa |
28309485 |
T |
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