View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_low_2 (Length: 570)
Name: NF13892_low_2
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 10 - 551
Target Start/End: Original strand, 34662093 - 34662634
Alignment:
| Q |
10 |
ataattctcaatagacctcatagataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatccggcttcaaaaacttccttc |
109 |
Q |
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| T |
34662093 |
ataattctcgatagacctcatagataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatccggcttcaaaaacttccttc |
34662192 |
T |
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| Q |
110 |
acagatatgtggaagataccatctctcgtgatatggatattcaatcatatgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgt |
209 |
Q |
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| T |
34662193 |
acagatatatggaagataccatctctcgtgatatggatattcaatcatatgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgt |
34662292 |
T |
|
| Q |
210 |
ttgtcaaactagtatttatgaagaagcttatggagcttttagatatgccatacatgctatacttggagggaaagatgtagtgactaatcgaaagaaattt |
309 |
Q |
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| T |
34662293 |
ttgtcaaactagtatttatgaagaagcttatggagcttttagatatgccatacatgctatacttggagggaaagatgtagtgactaatcgaaagaaattt |
34662392 |
T |
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| Q |
310 |
cataggcaaggtaagacttagatgccaagggtctattgtagtgaccacaatgttgatgctccttttatgatagtgatacaacctatgtttgtttgcaagt |
409 |
Q |
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| T |
34662393 |
cataggcaaggtaagacttagatgccaagggtctattgtagtgaccacaatgttgatgctccttttatgatagtgatacaacttatgtttgtttgcaagt |
34662492 |
T |
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| Q |
410 |
acttttatgagtttgagacaataagtgttgcaaaaaagaaatatgtagcatatgatttttcaaacaaaaaattaataacgtgtaacatgtgaacaacaga |
509 |
Q |
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| T |
34662493 |
acttttatgagtttgagacaataagtgttacaaaaaagaaatatgtagcatatgatttttcaaacaaaaaattaataacgtgtaacatgtgaacaacaga |
34662592 |
T |
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| Q |
510 |
gttcatgtatcatgtgaaaggtaagccatctatagtatttcc |
551 |
Q |
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| T |
34662593 |
gttcatgtatcatgtgaaaggtaagccatctatagtatttcc |
34662634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 159 - 456
Target Start/End: Original strand, 26956141 - 26956438
Alignment:
| Q |
159 |
tgctaaatcaactaagcaaaacattgtcgattatggaattctactaattgtttgtcaaactagtatttatgaagaagcttatggagcttttagatatgcc |
258 |
Q |
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| T |
26956141 |
tgctacatcaattaaggaaaacattgtcgatagtggaattctactaattggttgtcaaactagaatttctgaagaagcttatggagtttttagatatgcc |
26956240 |
T |
|
| Q |
259 |
atacatgctatacttggagggaaagatgtagtgactaatcgaaagaaatttcataggcaaggtaagacttagatgccaagggtctattgtagtgaccaca |
358 |
Q |
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| T |
26956241 |
atacatgctataattgcaggaaaagatgtcgttactaatcgaaagaaacttcataggcaaggcaagactcagatgccaaggatctattgtagtgactaca |
26956340 |
T |
|
| Q |
359 |
atgttgatgctccttttatgatagtgatacaacctatgtttgtttgcaagtacttttatgagtttgagacaataagtgttgcaaaaaagaaatatgta |
456 |
Q |
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| T |
26956341 |
atgttgatgctccttttatgatagtgatacaacttatgtttgtttgcaagtactattatgagtttgagacaataagtgttacaaaaaagaaatatgta |
26956438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 26881787 - 26881911
Alignment:
| Q |
29 |
atagataagagaaaaatatagaaaaggagcaaatagaagagagcacaaaggaaggatcatcc---ggcttcaaaaacttccttcacagatatgtggaaga |
125 |
Q |
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|||||| |||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||| |
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| T |
26881787 |
atagatgagagaaaaatatagaaaatgagctaatataagagagcacaaaggaaggatcatcctcatgcttcaaaaacatgcttcacatatatgtggaaga |
26881886 |
T |
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| Q |
126 |
taccatctctcgtgatatggatattca |
152 |
Q |
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| T |
26881887 |
tac--actctcgtgatatggatattca |
26881911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 26955529 - 26955592
Alignment:
| Q |
94 |
ttcaaaaacttccttcacagatatgtggaagataccatctctcgtgatatggatattcaatcat |
157 |
Q |
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| T |
26955529 |
ttcaaaaacttccttcacagcaatgtgaaagataccgtctttcgtggtatggatattcaatcat |
26955592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 492
Target Start/End: Original strand, 26956455 - 26956498
Alignment:
| Q |
449 |
aatatgtagcatatgatttttcaaacaaaaaattaataacgtgt |
492 |
Q |
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| T |
26956455 |
aatatgtagaatatgatttttcaaacaaaaaattaataatgtgt |
26956498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 456
Target Start/End: Original strand, 26838709 - 26838873
Alignment:
| Q |
301 |
aagaaatttcataggcaaggtaagacttagatgccaagggtctattgtagtgaccacaatgttgatgctcctttta----------tgatagtgatacaa |
390 |
Q |
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| T |
26838709 |
aagaaacttcataggcaaggttacagtcagaagccagggctctattgtagtgacaaccatgttgatgcttcttttatatgctgatttgataatggtac-a |
26838807 |
T |
|
| Q |
391 |
cctatgtttgtttgcaagtacttttatgagtttgagacaataagtgttgcaaaaaagaaatatgta |
456 |
Q |
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| T |
26838808 |
cttaagtttgtttgcaagtactttaataagtttgggtcaatcaatgttgcacaaaagaaatatgta |
26838873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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