View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_low_21 (Length: 237)
Name: NF13892_low_21
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 29022305 - 29022512
Alignment:
| Q |
15 |
aatattatgcagaagtcggagttcgaattttgctattgtatatagttggtagctaattcttcatttcttcacatttaaaatgtgtgaactcaaatcagta |
114 |
Q |
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| T |
29022305 |
aatattatgctgaagttggagttcgaattttgccattgtatatagttggtagctaactcttcatttcttcacatttaaaatgtgtgaactcaaatcagta |
29022404 |
T |
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| Q |
115 |
tgctactt---nnnnnnnngagttagcttccaaaagttgagatcacttgttctttggctgcaacacattttgcagcgtctggtttttggttttccaatgg |
211 |
Q |
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| T |
29022405 |
tgctacttaaaaaaaaaaagagttagcttccaaaagttgagatcacttgttctttggctgcaacacatttttcagcgtctggttttttattttccaatgg |
29022504 |
T |
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| Q |
212 |
ctcggtat |
219 |
Q |
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| T |
29022505 |
cacggtat |
29022512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 9325069 - 9325135
Alignment:
| Q |
153 |
atcacttgttctttggctgcaacacattttgcagcgtctggtttttggttttccaatggctcggtat |
219 |
Q |
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| T |
9325069 |
atcacttgttctttggttgtgacacattatgcagcgtgtggtttttggttttccggtggctcggtat |
9325135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 2704931 - 2704867
Alignment:
| Q |
153 |
atcacttgttctttggctgcaacacattttgcagcgtctggtttttggttttccaatggctcggt |
217 |
Q |
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| T |
2704931 |
atcacttgttctttggctgcgacacattttgcagggtgtgatttttggttttccagtggctcggt |
2704867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 27677524 - 27677577
Alignment:
| Q |
155 |
cacttgttctttggctgcaacacattttgcagcgtctggtttttggttttccaa |
208 |
Q |
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| T |
27677524 |
cacttgttctttggctgcgagacattttgcagcgtgtggctcttggttttccaa |
27677577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 21553671 - 21553708
Alignment:
| Q |
74 |
ttcatttcttcacatttaaaatgtgtgaactcaaatca |
111 |
Q |
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| T |
21553671 |
ttcatttcttcacatttaaaatgtgtgagctccaatca |
21553708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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