View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_low_26 (Length: 202)
Name: NF13892_low_26
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 41295802 - 41295638
Alignment:
| Q |
19 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
41295802 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatatcaggttgagagtttctctttagaagata |
41295703 |
T |
|
| Q |
119 |
cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
183 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41295702 |
cataaatatctaatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
41295638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 30550945 - 30550781
Alignment:
| Q |
19 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |
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| T |
30550945 |
attattgaatggagcaagaaaagaaaatcacagggttttcagttagatatgcttagaccaaaacataaatatcaggttgagagtttctctttagaggata |
30550846 |
T |
|
| Q |
119 |
cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
183 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30550845 |
catcaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
30550781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 27690048 - 27690212
Alignment:
| Q |
19 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
27690048 |
attattgaatggtgcaagaaaagaaaattacaaggttttcagttagatatgcttagaccaaaacataaatatcgggttgagagtttctctttagaagata |
27690147 |
T |
|
| Q |
119 |
cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
183 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27690148 |
catcaatatctgatggaagtccatttttttgaagtgtgaacaaccacacggttaatagcagaatg |
27690212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 22766197 - 22766033
Alignment:
| Q |
19 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
22766197 |
attattgaatagagcaagaaaagaaaattatagggttttctgttagatatgcttaaaccaaaacataaatatcgggttgagagtttctctttagaagata |
22766098 |
T |
|
| Q |
119 |
cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
183 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22766097 |
catcaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaatagcagaatg |
22766033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 37623891 - 37623779
Alignment:
| Q |
71 |
ttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggt |
170 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
37623891 |
ttagaccaaaacataaatatcaggttgagagtttctctttataagatacattaatatataatggaagtccaattttttgaagtgtgaacaaccacacggt |
37623792 |
T |
|
| Q |
171 |
taacagcagaatg |
183 |
Q |
| |
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||||||||||||| |
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| T |
37623791 |
taacagcagaatg |
37623779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 9e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 34902343 - 34902179
Alignment:
| Q |
19 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
34902343 |
attattgaatggagtaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacattaatatcgggttgagagtttctctttagaagata |
34902244 |
T |
|
| Q |
119 |
cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
183 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34902243 |
catcaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaatagcagaatg |
34902179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 13362937 - 13362783
Alignment:
| Q |
19 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
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| T |
13362937 |
attattgaatggagcaacaaaagaaaattacagggttttcagttagatatgcttagaccaaaatataaatatcgagttgagagtttctctttagaagata |
13362838 |
T |
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| Q |
119 |
cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaa |
173 |
Q |
| |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13362837 |
catcaatatttgatggaagtccaattttttgaagtgtgaacaaccacacggttaa |
13362783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 22608384 - 22608220
Alignment:
| Q |
19 |
attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| |
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| T |
22608384 |
attattgaatggaacaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatgccgggttgagagtttctcttcagaagata |
22608285 |
T |
|
| Q |
119 |
cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatg |
183 |
Q |
| |
|
||| ||| ||||||| ||||||||||||| | |||| |||||||||||||||||| ||||||||| |
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|
| T |
22608284 |
catcaatgtctgatgaaagtccaatttttggtagtgcgaacaaccacacggttaatagcagaatg |
22608220 |
T |
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