View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13892_low_6 (Length: 412)
Name: NF13892_low_6
Description: NF13892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13892_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 26507502 - 26507896
Alignment:
| Q |
1 |
tatccaaagaatctaactaactctgaactatatctccaagagatttataagtnnnnnnnnnngcaaaagcaacccctattacaattattgaagaattaat |
100 |
Q |
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| T |
26507502 |
tatccaaagaaacttacaaattctgaattatatctacaagagatctataagtaccaaaaacagcaatagcaacccccattacaattattgaataattaat |
26507601 |
T |
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| Q |
101 |
aaacatttcacacccacatctcttgtatgatcctgaaatcttcaagtagcaaattgatggcactaaaattgaagctgagacacttaacaatgctccaaca |
200 |
Q |
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| T |
26507602 |
aaccatttcacacccaaatctcttgtatgatcctgaaatcttcaagtagcaaattgatggcactaaaattgaagctgagacacttaacaatgctccaaca |
26507701 |
T |
|
| Q |
201 |
agtgacataagatatccaaataagggaatggtcacagctatagtaagagaacctactaataaagatgtactaataaccatatgtgtgactcttttgttgt |
300 |
Q |
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| T |
26507702 |
agtgacataagatatccaaataagggaatggtcacagctatagtaagagaacctactaataaagatgtactaataatcatatgtgtgacccttttgttgt |
26507801 |
T |
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| Q |
301 |
aataattgcatgaaaccttcatttttatggcatttatgactggagtaagcattaatgcatattttgctattggattgactaaggtagtatatatt |
395 |
Q |
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| T |
26507802 |
aataattgcatgaaaccttcatttttatagcatttatgactggagtaagcattaatgcatattttgctattggattgactaaggtagtatatatt |
26507896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 63 - 395
Target Start/End: Original strand, 26478296 - 26478628
Alignment:
| Q |
63 |
gcaaaagcaacccctattacaattattgaagaattaataaacatttcacacccacatctcttgtatgatcctgaaatcttcaagtagcaaattgatggca |
162 |
Q |
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| T |
26478296 |
gcaatagcaacccccactacaatgattgaataattaataaccatttcatacccaaatctcttgtatgcacctgaaatcttcaagtaacaaattgatggca |
26478395 |
T |
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| Q |
163 |
ctaaaattgaagctgagacacttaacaatgctccaacaagtgacataagatatccaaataagggaatggtcacagctatagtaagagaacctactaataa |
262 |
Q |
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| T |
26478396 |
ctaaaattgaagctgagatgcataataatgctccaacaagtgacataaggtatgcaaataaaggaatagccactgctataataagagaaattattaacaa |
26478495 |
T |
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| Q |
263 |
agatgtactaataaccatatgtgtgactcttttgttgtaataattgcatgaaaccttcatttttatggcatttatgactggagtaagcattaatgcatat |
362 |
Q |
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||| |||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26478496 |
agacgtactaataatcatatgtgtgaaccttttgttgtagtagttgcatgaaacctttatttttatggcatttatgactggagtaagcaataatgcatat |
26478595 |
T |
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| Q |
363 |
tttgctattggattgactaaggtagtatatatt |
395 |
Q |
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|||||||||||||| || || ||||| |||||| |
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| T |
26478596 |
tttgctattggattaaccaaagtagtgtatatt |
26478628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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