View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13893_high_11 (Length: 366)

Name: NF13893_high_11
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13893_high_11
NF13893_high_11
[»] chr4 (1 HSPs)
chr4 (29-358)||(37210945-37211267)
[»] chr6 (5 HSPs)
chr6 (247-296)||(9540594-9540643)
chr6 (162-221)||(29389145-29389204)
chr6 (159-285)||(33240836-33240956)
chr6 (158-222)||(9929362-9929426)
chr6 (247-283)||(18075587-18075623)
[»] chr5 (1 HSPs)
chr5 (257-306)||(32177341-32177390)
[»] chr2 (2 HSPs)
chr2 (259-300)||(5868026-5868067)
chr2 (252-292)||(24166794-24166834)
[»] chr7 (2 HSPs)
chr7 (258-297)||(2391581-2391620)
chr7 (162-221)||(40172484-40172543)
[»] chr1 (1 HSPs)
chr1 (158-221)||(46940016-46940079)
[»] chr8 (2 HSPs)
chr8 (259-293)||(31078737-31078771)
chr8 (167-221)||(40899694-40899748)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 29 - 358
Target Start/End: Complemental strand, 37211267 - 37210945
Alignment:
Q  29 tatgtttggaccctatggtgcgatttgctatataannnnnnnnnnnnttctataaaaacaagttttgtgatatacagcctcctatnnnnnnnn-ttgact 127  Q
    ||||||||||||| |||||||||||||||||||||            |||||||||| |||||||||||||||||||||||||||         ||||||    
T  37211267 tatgtttggaccccatggtgcgatttgctatataaccccctccccccttctataaaa-caagttttgtgatatacagcctcctataaaaaaaaattgact 37211169  T
Q  128 ccatcttttcccagcttattgattcctcgtgcgccctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaacttata 227  Q
    ||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37211168 ccatcttttcccagcttattgattcctcgt-------atacagttcagattatagaattcgaacgctataaacaccctataaaaaccttcaaaacttata 37211076  T
Q  228 aaatatttcggattttatatttataatctgaatagggcgcgtgagaaactcataggatgaaaaaagtaataatcaaaaaactttaagccctacaaacttg 327  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37211075 aaacatttcggattttatatttataatctgaataggacgcgtgagaaactcataggatgaaaaaagtaataatcaaaaaactttaagccctacaaacttg 37210976  T
Q  328 ggcctaggttgtcgcatctcgggcctatgct 358  Q
    |||||||||||||||||||||||||||||||    
T  37210975 ggcctaggttgtcgcatctcgggcctatgct 37210945  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 9540594 - 9540643
Alignment:
Q  247 tttataatctgaatagggcgcgtgagaaactcataggatgaaaaaagtaa 296  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  9540594 tttagaatctgaatagggcgcgtgagaaactcataggatgagaaaagtaa 9540643  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 29389145 - 29389204
Alignment:
Q  162 cctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 221  Q
    |||||||| ||| ||||||| ||| ||||||  |||||||||| ||||||||||||||||    
T  29389145 cctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaa 29389204  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 33240836 - 33240956
Alignment:
Q  159 cgccctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaacttataaaatatttcggattttatatttataatctga 258  Q
    ||||||||||| ||  |||| |||||| |||||  |||||| |||| ||||||||||||||||    | |||||||||||||      |||| |||| ||    
T  33240836 cgccctatacagtttggattttagaatccgaactgtataaataccccataaaaaccttcaaaaacgttgaaatatttcggat------tttagaatccga 33240929  T
Q  259 atagggcgcgtgagaaactcataggat 285  Q
    |||||||||  ||||||||||||||||    
T  33240930 atagggcgcacgagaaactcataggat 33240956  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 9929426 - 9929362
Alignment:
Q  158 gcgccctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaac 222  Q
    ||||||||| || ||| |||||||||||||||||   |||||||||  |||||||||| ||||||    
T  9929426 gcgccctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaaac 9929362  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 18075587 - 18075623
Alignment:
Q  247 tttataatctgaatagggcgcgtgagaaactcatagg 283  Q
    |||||||| |||||||||||| |||||||||||||||    
T  18075587 tttataatttgaatagggcgcatgagaaactcatagg 18075623  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 32177341 - 32177390
Alignment:
Q  257 gaatagggcgcgtgagaaactcataggatgaaaaaagtaataatcaaaaa 306  Q
    |||||||||| |||||||||||||||||||| ||||||||| | ||||||    
T  32177341 gaatagggcgtgtgagaaactcataggatgagaaaagtaatgaccaaaaa 32177390  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 5868026 - 5868067
Alignment:
Q  259 atagggcgcgtgagaaactcataggatgaaaaaagtaataat 300  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  5868026 atagggcgcgtgagaaactcataggatgagaaaagaaataat 5868067  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 24166834 - 24166794
Alignment:
Q  252 aatctgaatagggcgcgtgagaaactcataggatgaaaaaa 292  Q
    |||| ||||||||||||||||||||||||||| || |||||    
T  24166834 aatccgaatagggcgcgtgagaaactcatagggtggaaaaa 24166794  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 2391620 - 2391581
Alignment:
Q  258 aatagggcgcgtgagaaactcataggatgaaaaaagtaat 297  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  2391620 aatagtgcgcgcgagaaactcataggatgaaaaaagtaat 2391581  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 40172484 - 40172543
Alignment:
Q  162 cctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 221  Q
    ||||| |||||| |||||||||||| |||||  |||||||||| |||||||||| |||||    
T  40172484 cctatgcaattcggattatagaatttgaacaacataaacacccaataaaaacctccaaaa 40172543  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 46940079 - 46940016
Alignment:
Q  158 gcgccctatacaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 221  Q
    |||||||||||| ||| ||||||||||| ||||||  |||||||  ||||||| ||||||||||    
T  46940079 gcgccctatacagttcggattatagaatccgaacaacataaacaatctataaagaccttcaaaa 46940016  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 31078771 - 31078737
Alignment:
Q  259 atagggcgcgtgagaaactcataggatgaaaaaag 293  Q
    ||||| |||||||||||||||||||||||||||||    
T  31078771 ataggacgcgtgagaaactcataggatgaaaaaag 31078737  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 40899748 - 40899694
Alignment:
Q  167 acaattcagattatagaattcgaacactataaacaccctataaaaaccttcaaaa 221  Q
    ||||||||||||||| ||||||||    |||||||||| ||||||||||||||||    
T  40899748 acaattcagattataaaattcgaaaggcataaacaccccataaaaaccttcaaaa 40899694  T

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