View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_high_25 (Length: 254)
Name: NF13893_high_25
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5040297 - 5040535
Alignment:
| Q |
1 |
tcatcattaaggaaaattttaaacaagtcaagtcactgataattattaaccgaagaaagttacnnnnnnnntatgataatcaaaacattaacaattagat |
100 |
Q |
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| T |
5040297 |
tcatcattaaggaaaattttaaacaagtcaagtcactgataattattaaccgaagaaagttacaaaaaaaatatgataatcaaa-cattaacaattagat |
5040395 |
T |
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| Q |
101 |
atttcctgcaactttggctagaaaattaataaagatcagatacattaatcattgtctttgataacaatgaaatgattagagatcatcatgaattcatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5040396 |
atttcctgcaactttggctagaaaattaataaagatcagatacattaatcattgtctttgataataatgaaatgattagagatcatcatgaattcatgat |
5040495 |
T |
|
| Q |
201 |
aataatcatgtcaaccctgtgaatgaggattgtgattact |
240 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
5040496 |
aatattcatgtcaaccctgtgaatgaggattgtgattact |
5040535 |
T |
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