View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_1 (Length: 702)
Name: NF13893_low_1
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 15 - 684
Target Start/End: Complemental strand, 40471579 - 40470905
Alignment:
| Q |
15 |
cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471579 |
cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca |
40471480 |
T |
|
| Q |
115 |
agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471479 |
agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
40471380 |
T |
|
| Q |
215 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471379 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag |
40471280 |
T |
|
| Q |
315 |
ataaagtatggagtaataatagtaatcagaatgaaaggaatgaaggaagaatagagaatcaagtcaaagcttcacagcctaatgattctgctctagaaac |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
40471279 |
ataaagtatggagtaataatagtaatcagaatgaaaggaatgaaggaagaatagagaatcaagtcaaagcttcactgcctgatgattctgctctagaaac |
40471180 |
T |
|
| Q |
415 |
ttcttgtggtctaagcggggaatgtgaggaaggaagcaaaggatttgaggcagaggaagatgactctagaagtaaaagaaggtga--------nnnnnnn |
506 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471179 |
ttcttgtggtctaagtggggaatgtgaggaaggaagcaaaggatttgaggcagaggaagatgactctagaagtaaaagaaggtgatttttttctttcttt |
40471080 |
T |
|
| Q |
507 |
nnnnnnnactaaatctatagcctgaagtttatacataatagcttcatgagtttgcaatatataacttcatattatttgcaatgttttattaaaaactgga |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
40471079 |
tttttttactaaatctatagcctgaagtttatacataatagcttcatgagtttgcaatatataacttcatataatttgcaatgtt---ttaaaaactgga |
40470983 |
T |
|
| Q |
607 |
tcaaaaagacagcttcaactgtgaaccagccagttcgttggttggtttcattccagttatgctatagtctggttgaag |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
40470982 |
tcaaaaagacagcttcaactgtgaaccagccagttcgttggttggtttcattccggttatactatagtcaggttgaag |
40470905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 26332607 - 26332543
Alignment:
| Q |
92 |
tggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
156 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |||| || ||||||||||||||||| |
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|
| T |
26332607 |
tggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcac |
26332543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 16863593 - 16863893
Alignment:
| Q |
15 |
cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
16863593 |
cacagagcattgaggaggaccaaaaagcattaccatccacaaataatgttgatagaccttcgtatgatggatataactagagaaaatatggaaagaag-- |
16863690 |
T |
|
| Q |
115 |
agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
214 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16863691 |
------------cgagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaagttgaaagatcattagatggtgagattgca |
16863778 |
T |
|
| Q |
215 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
16863779 |
gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgacttctgatggaatggttcaag |
16863878 |
T |
|
| Q |
315 |
ataaagtatggagta |
329 |
Q |
| |
|
||||||||||||||| |
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| T |
16863879 |
ataaagtatggagta |
16863893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 2056300 - 2056406
Alignment:
| Q |
80 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaa |
179 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| || || |||||||| ||||||||||| |||||||| || || | |||||||||||||||| |
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|
| T |
2056300 |
gatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaa |
2056399 |
T |
|
| Q |
180 |
agaaagt |
186 |
Q |
| |
|
||||||| |
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|
| T |
2056400 |
agaaagt |
2056406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 26967130 - 26967036
Alignment:
| Q |
78 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcca |
172 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || ||||| |||||||| || |||| |||||||||| || ||||| || |||||||||||| |
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|
| T |
26967130 |
atgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtcca |
26967036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 18876394 - 18876301
Alignment:
| Q |
78 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc |
171 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||| || || ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
18876394 |
atgatggctacaactggaggaaatacggacagaaacaggtgaaaggtagcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc |
18876301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 31615430 - 31615312
Alignment:
| Q |
78 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaa |
177 |
Q |
| |
|
|||||||||| || ||| ||||||||||||| |||||||| || ||||| || |||| ||||||| ||||| |||||||| ||||| ||||| || |
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| T |
31615430 |
atgatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcacataccctaactgtcctacaaa |
31615331 |
T |
|
| Q |
178 |
aaagaaagttgaaagatca |
196 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
31615330 |
gaagaaagttgagagatca |
31615312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 3669194 - 3669270
Alignment:
| Q |
80 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
156 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| ||||| |||||||| || |||| ||||||||||||||||||| |
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|
| T |
3669194 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac |
3669270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 32110321 - 32110260
Alignment:
| Q |
89 |
aactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaa |
150 |
Q |
| |
|
|||||||| || |||||||| || ||||| ||||| |||||| |||||||||||||||||| |
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|
| T |
32110321 |
aactggaggaagtatggacaaaaacaagtgaaaggttgcgagtttcctcgaagttattacaa |
32110260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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