View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13893_low_12 (Length: 336)

Name: NF13893_low_12
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13893_low_12
NF13893_low_12
[»] chr4 (2 HSPs)
chr4 (1-324)||(49553341-49553664)
chr4 (31-86)||(17357048-17357103)
[»] chr2 (14 HSPs)
chr2 (36-94)||(14575201-14575259)
chr2 (36-89)||(14520122-14520175)
chr2 (36-85)||(15023636-15023685)
chr2 (31-86)||(14476142-14476197)
chr2 (39-86)||(14502183-14502230)
chr2 (36-86)||(14144911-14144961)
chr2 (36-86)||(14162244-14162294)
chr2 (36-86)||(14485239-14485289)
chr2 (34-68)||(14567247-14567281)
chr2 (37-86)||(14165304-14165353)
chr2 (36-85)||(14552210-14552259)
chr2 (37-86)||(15004179-15004228)
chr2 (36-64)||(13707181-13707209)
chr2 (36-88)||(14850739-14850791)
[»] chr3 (1 HSPs)
chr3 (36-88)||(38525068-38525120)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 49553341 - 49553664
Alignment:
Q  1 tactcttatgcctcgaccccaacaagctacttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcgcattgtaaatgc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49553341 tactcttatgcctcgaccccaacaagatacttttaccaaagtttcaatttttactctccaaaggtgcttctacttctgatattgttcgcattgtaaatgc 49553440  T
Q  101 taaccctaaattcctattaagaagtttgcacaatcatattatccctacttatgattttattagagggtttcttcaatctgataaacaagccatcacatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553441 taaccctaaattcctattaagaagtttgcacaatcatattatccctacttatgattttattagagggtttcttcaatctgataaacaagccatcacatgt 49553540  T
Q  201 attaatcgttatgcttcttttatttctgattctcgtgtcgaaactaatgtcaaattattgcttgataatggagccacacactcaaatattgctacattgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553541 attaatcgttatgcttcttttatttctgattctcgtgtcgaaactaatgtcaaattattgcttgataatggagccacacactcaaatattgctacattgt 49553640  T
Q  301 tgcgtagttctcctaggatatatt 324  Q
    ||||||||||||||||||||||||    
T  49553641 tgcgtagttctcctaggatatatt 49553664  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 17357103 - 17357048
Alignment:
Q  31 ttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    |||| ||||||||| ||||||| || ||||||||||||||| | ||||||||||||    
T  17357103 ttttgccaaagtttgaattttttctatccaaaggtgctacttcatctgatattgtt 17357048  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 14575201 - 14575259
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcgcattgt 94  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||| |||| |||||    
T  14575201 ccaaagtttcaatttttactctccaaaggtgcttctacctctgacattcttcgtattgt 14575259  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 14520122 - 14520175
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcgc 89  Q
    ||||||||||||||||||||||||||||||||| || | ||||||||| |||||    
T  14520122 ccaaagtttcaatttttactctccaaaggtgcttcttcctctgatattattcgc 14520175  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 15023636 - 15023685
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgt 85  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  15023636 ccaaagtttcaatttttactctccaaaggcgcttctacttctgacattgt 15023685  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 14476197 - 14476142
Alignment:
Q  31 ttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    |||| ||||||||||||||||| ||||||||||||||| |||| ||||| ||||||    
T  14476197 ttttgccaaagtttcaattttttctctccaaaggtgcttctacatctgacattgtt 14476142  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 14502183 - 14502230
Alignment:
Q  39 aagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    |||||||||||||| ||||||||||||||| |||| ||||| ||||||    
T  14502183 aagtttcaattttttctctccaaaggtgcttctacctctgacattgtt 14502230  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 14144911 - 14144961
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14144911 ccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14144961  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 14162294 - 14162244
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14162294 ccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14162244  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 14485239 - 14485289
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14485239 ccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14485289  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 14567247 - 14567281
Alignment:
Q  34 taccaaagtttcaatttttactctccaaaggtgct 68  Q
    ||||||||||||||||||||||| |||||||||||    
T  14567247 taccaaagtttcaatttttactcgccaaaggtgct 14567281  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 14165353 - 14165304
Alignment:
Q  37 caaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    |||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14165353 caaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14165304  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 14552210 - 14552259
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgt 85  Q
    ||||||||||||||||||||||||| ||||||| || | ||||| |||||    
T  14552210 ccaaagtttcaatttttactctccataggtgcttcttcctctgacattgt 14552259  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 15004228 - 15004179
Alignment:
Q  37 caaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 86  Q
    |||||||||||||||| || |||||||||||| || | ||||||||||||    
T  15004228 caaagtttcaattttttctatccaaaggtgcttcttcctctgatattgtt 15004179  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 13707209 - 13707181
Alignment:
Q  36 ccaaagtttcaatttttactctccaaagg 64  Q
    |||||||||||||||||||||||||||||    
T  13707209 ccaaagtttcaatttttactctccaaagg 13707181  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 14850791 - 14850739
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcg 88  Q
    ||||||||||| |||||| |||||||||||||| || | ||||| ||||||||    
T  14850791 ccaaagtttcagtttttaatctccaaaggtgcttcttcctctgacattgttcg 14850739  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 38525120 - 38525068
Alignment:
Q  36 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcg 88  Q
    |||||||||||||||||| |||||||||||| |  ||| ||||| ||||||||    
T  38525120 ccaaagtttcaatttttaatctccaaaggtgtttttacctctgacattgttcg 38525068  T

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