View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13893_low_13 (Length: 316)

Name: NF13893_low_13
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13893_low_13
NF13893_low_13
[»] chr5 (2 HSPs)
chr5 (18-306)||(17778709-17778997)
chr5 (196-248)||(16230774-16230826)
[»] chr1 (2 HSPs)
chr1 (194-244)||(32102331-32102381)
chr1 (209-248)||(46189357-46189396)
[»] chr4 (1 HSPs)
chr4 (201-248)||(9957090-9957137)
[»] chr6 (1 HSPs)
chr6 (195-244)||(25094709-25094758)
[»] chr8 (1 HSPs)
chr8 (198-248)||(30011755-30011805)
[»] chr2 (1 HSPs)
chr2 (174-247)||(33657408-33657480)
[»] scaffold0929 (1 HSPs)
scaffold0929 (193-245)||(3931-3983)
[»] chr7 (1 HSPs)
chr7 (193-245)||(6366200-6366252)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 17778997 - 17778709
Alignment:
Q  18 ttcttgaatattctacagatagcccatgattcctgcatgttaaaagacaagttaaatatgtccataaattatatttacaaccacaaacacttaaaatcga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  17778997 ttcttgaatattctacagatagcccatgattcctgcatgttaaaagacaagttaaagatgtccataaattatatttacaaccacaaacacttaaaaccga 17778898  T
Q  118 agtttnnnnnnnnnnnnnnnn-tcatagacatcatactgtaaagatttttgtagcggtcaatcaattataaccgccaaaatcattaaatatgtttgactt 216  Q
    |||||                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17778897 agtttaaaaaaaataaaaaaaatcatagacatcataccgtaaagatttttgtagcggtcaatcaattataaccgccaaaatcattaaatatatttgactt 17778798  T
Q  217 taatcataattatttttaaaatcacacatatggccaa-tatatgatatgtagacaatgtcaacaagtttttgacacccccttcatctcact 306  Q
    ||||||||| | | |||||| |  ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  17778797 taatcataactttgtttaaagt--cacatatggccaactatatgatatgttgacaatgtcaacaagtttttgacaccgcctccatctcact 17778709  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 16230826 - 16230774
Alignment:
Q  196 atcattaaatatgtttgactttaatcataattatttttaaaatcacacatatg 248  Q
    |||||| || |||||||||||||||||||| || || |||||||| |||||||    
T  16230826 atcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatatg 16230774  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 32102331 - 32102381
Alignment:
Q  194 aaatcattaaatatgtttgactttaatcataattatttttaaaatcacaca 244  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  32102331 aaatcattaaaaatgtttgactttaatcataaataattttaaaatcacaca 32102381  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 46189396 - 46189357
Alignment:
Q  209 tttgactttaatcataattatttttaaaatcacacatatg 248  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  46189396 tttgactttaatcataactatttttaaaatcagacatatg 46189357  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 9957090 - 9957137
Alignment:
Q  201 taaatatgtttgactttaatcataattatttttaaaatcacacatatg 248  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  9957090 taaaaatgttagactttaatcataattatttttaaaattacacatatg 9957137  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 25094758 - 25094709
Alignment:
Q  195 aatcattaaatatgtttgactttaatcataattatttttaaaatcacaca 244  Q
    |||||||||| |||||||||||||||||||| || ||||||| |||||||    
T  25094758 aatcattaaacatgtttgactttaatcataagtacttttaaagtcacaca 25094709  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 30011805 - 30011755
Alignment:
Q  198 cattaaatatgtttgactttaatcataattatttttaaaatcacacatatg 248  Q
    ||||||| ||||||||||| |||||||| || || ||||||||||||||||    
T  30011805 cattaaaaatgtttgacttcaatcataactacttctaaaatcacacatatg 30011755  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 33657408 - 33657480
Alignment:
Q  174 tcaatcaattataaccgccaaaatcattaaatatgtttgactttaatcataattatttttaaaatcacacatat 247  Q
    ||||||||| ||||||| |||| ||||| || || ||||||||||| ||||| |||||||||| |||| |||||    
T  33657408 tcaatcaatcataaccgtcaaa-tcattgaaaatatttgactttaaccataactatttttaaagtcactcatat 33657480  T

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Target: scaffold0929 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0929
Description:

Target: scaffold0929; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 3983 - 3931
Alignment:
Q  193 aaaatcattaaatatgtttgactttaatcataattatttttaaaatcacacat 245  Q
    |||||||||||| || |||||||||||  |||| |||||||||| ||||||||    
T  3983 aaaatcattaaaaatatttgactttaagtataactatttttaaagtcacacat 3931  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 6366252 - 6366200
Alignment:
Q  193 aaaatcattaaatatgtttgactttaatcataattatttttaaaatcacacat 245  Q
    |||||||||||| || |||||||||||  |||| |||||||||| ||||||||    
T  6366252 aaaatcattaaaaatatttgactttaagtataactatttttaaagtcacacat 6366200  T

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