View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13893_low_14 (Length: 300)

Name: NF13893_low_14
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13893_low_14
NF13893_low_14
[»] chr3 (15 HSPs)
chr3 (12-220)||(53072944-53073159)
chr3 (16-178)||(53066079-53066239)
chr3 (18-178)||(53331081-53331242)
chr3 (18-178)||(53334765-53334926)
chr3 (18-178)||(53338442-53338603)
chr3 (18-178)||(53363321-53363482)
chr3 (241-286)||(53065885-53065930)
chr3 (241-286)||(53072876-53072921)
chr3 (143-178)||(53066025-53066060)
chr3 (143-178)||(53331261-53331296)
chr3 (143-178)||(53334945-53334980)
chr3 (143-178)||(53338622-53338657)
chr3 (248-284)||(53331401-53331437)
chr3 (248-284)||(53335085-53335121)
chr3 (248-284)||(53338762-53338798)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 53073159 - 53072944
Alignment:
Q  12 tcatcacaaatgggtaactcaacctaatcctattttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttggtgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53073159 tcatcacaaatgggtaactcaacctaatcctattttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttggtgt 53073060  T
Q  112 ttcttatttcatcaatacaataaaaagaaaacttctccatgggaagaagccaaaggagcaaaa-------agtactgagggagagctctttatgatgcaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  53073059 ttcttatttcatcaatacaataaaaagaaaacttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgagggagagctctttatgatgcaa 53072960  T
Q  205 agacgttggaaagtaa 220  Q
    ||||||||||||||||    
T  53072959 agacgttggaaagtaa 53072944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 53066239 - 53066079
Alignment:
Q  16 cacaaatgggtaactcaacctaatcctattttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttggtgtttct 115  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||| |||||||  ||||||    
T  53066239 cacaaatgggtaattcaacctaatcctattttcataaaattattcttttgctgtttgattcgatgaatctcaaataacaacctcaccctttg--gtttct 53066142  T
Q  116 tatttcatcaatacaataaaaagaaaacttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||  |||||||||||||||    
T  53066141 tatttcatcaatacaatagaaagaaaacttcttcatgggaagaagcggaaggagcaaaaagta 53066079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 53331081 - 53331242
Alignment:
Q  18 caaatgggtaactcaacctaatcctattttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttgg-tgtttctt 116  Q
    ||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||| || |||||||| |  || ||    
T  53331081 caaatgggtaattcaacctaatcctattttcatacaagtattattttgctgtttgatttgatgaatctcaaataataacttcaccctttggattcttatt 53331180  T
Q  117 atttcatcaatacaataaaaagaaaacttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||  ||||||||| |||||    
T  53331181 atttcatcaatacaatagaaagaaaacttcttcatgagaagaagcggaaggagcaagaagta 53331242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 53334765 - 53334926
Alignment:
Q  18 caaatgggtaactcaacctaatcctattttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttgg-tgtttctt 116  Q
    ||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||| || |||||||| |  || ||    
T  53334765 caaatgggtaattcaacctaatcctattttcatacaagtattattttgctgtttgatttgatgaatctcaaataataacttcaccctttggattcttatt 53334864  T
Q  117 atttcatcaatacaataaaaagaaaacttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||  ||||||||| |||||    
T  53334865 atttcatcaatacaatagaaagaaaacttcttcatgagaagaagcggaaggagcaagaagta 53334926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 53338442 - 53338603
Alignment:
Q  18 caaatgggtaactcaacctaatcctattttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttgg-tgtttctt 116  Q
    ||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||| || |||||||| |  || ||    
T  53338442 caaatgggtaattcaacctaatcctattttcatacaagtattattttgctgtttgatttgatgaatctcaaataataacttcaccctttggattcttatt 53338541  T
Q  117 atttcatcaatacaataaaaagaaaacttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||  ||||||||| |||||    
T  53338542 atttcatcaatacaatagaaagaaaacttcttcatgagaagaagcggaaggagcaagaagta 53338603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 53363321 - 53363482
Alignment:
Q  18 caaatgggtaactcaacctaatcctattttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttgg-tgtttctt 116  Q
    ||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| || ||||| || |  || ||    
T  53363321 caaatgggtaattcaacctaatcctattttcatacaagtattcttttgctgtttgatttgatgaatctcaaataataacttcacccttcggattcttatt 53363420  T
Q  117 atttcatcaatacaataaaaagaaaacttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||| ||| ||||||||| | |||||||||||  |||||||||||||||    
T  53363421 atttcatcaatacaatagaaaaaaaacttcttcttgggaagaagcggaaggagcaaaaagta 53363482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 53065930 - 53065885
Alignment:
Q  241 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttct 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  53065930 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttct 53065885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 53072921 - 53072876
Alignment:
Q  241 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttct 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  53072921 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttct 53072876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 53066060 - 53066025
Alignment:
Q  143 cttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  53066060 cttctccatgggaagaagccaaaggagcaaaaagta 53066025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 53331261 - 53331296
Alignment:
Q  143 cttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  53331261 cttctccatgggaagaagccaaaggagcaaaaagta 53331296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 53334945 - 53334980
Alignment:
Q  143 cttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  53334945 cttctccatgggaagaagccaaaggagcaaaaagta 53334980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 53338622 - 53338657
Alignment:
Q  143 cttctccatgggaagaagccaaaggagcaaaaagta 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  53338622 cttctccatgggaagaagccaaaggagcaaaaagta 53338657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 53331401 - 53331437
Alignment:
Q  248 ttgcatttgatcaaataacctcagcttatggttgttt 284  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53331401 ttgcatttggtcaaataacctcagcttatggttgttt 53331437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 53335085 - 53335121
Alignment:
Q  248 ttgcatttgatcaaataacctcagcttatggttgttt 284  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53335085 ttgcatttggtcaaataacctcagcttatggttgttt 53335121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 53338762 - 53338798
Alignment:
Q  248 ttgcatttgatcaaataacctcagcttatggttgttt 284  Q
    ||||||||| |||||||||||||||||||||||||||    
T  53338762 ttgcatttggtcaaataacctcagcttatggttgttt 53338798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University