View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_18 (Length: 278)
Name: NF13893_low_18
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 4033270 - 4033522
Alignment:
| Q |
12 |
atgaactagttctatctttacttnnnnnnntatttctagtgaagtttatgtataatgagagggtttacaaacttcttcattaaaaaactctctttcaaat |
111 |
Q |
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| T |
4033270 |
atgaactagttctatctttacttaaaaaaatatttctagtgaagtttatgtataatgagagggtttacaaacttcttcattaaaaaactctctttcaaat |
4033369 |
T |
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| Q |
112 |
gttcgatgaaacttttagaaaaatttgaatgttttctacaacagtatagctgcaactagttttaaaacaaatgttatctaattgaagttaagaaaatact |
211 |
Q |
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| T |
4033370 |
gttcgatgaaacttttagaaaaatttgaatgttttctacaacagtatagctgcaactagttttaaaacaaatgttatctaattgaaattaagaaaatact |
4033469 |
T |
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| Q |
212 |
ggttttatttgataaaaaattactannnnnnnaacattgtcattgttattttt |
264 |
Q |
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| T |
4033470 |
agttttatttgataaaaaattactatttttttaacattgtcattgttattttt |
4033522 |
T |
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