View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_19 (Length: 272)
Name: NF13893_low_19
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 40828246 - 40828000
Alignment:
| Q |
10 |
attattctcaaagagtcatgaactagtttatgatttgaaaaag---tgtgaatggaacttttgatcacacacttgaatagtttctatcttgccttttttg |
106 |
Q |
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| T |
40828246 |
attattctcaaagagtcatgaactagtttatgatttgaaaaagaagtgtgaatggaacttttgatcacacacttgaatagtttctatcttgccttttttg |
40828147 |
T |
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| Q |
107 |
tttagaatacattttttcagttcaaggaaaccaaacctcaactttacactatttttgagtaatatgtgatgtgaaagacattaatacgtagaatgtaact |
206 |
Q |
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| T |
40828146 |
ttgagaatacattttttcagttcaaggaaaccaaacctcaactttacactatttttgagtaatatgtgatgtgaaagacattaatacgtagaatgtaact |
40828047 |
T |
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| Q |
207 |
tattatctataaagaaaataggtgagtttccagaattagatcgttag |
253 |
Q |
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| T |
40828046 |
tattatctataaagaaaataggtgagtttccagaattagatcgttag |
40828000 |
T |
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