View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13893_low_2 (Length: 698)

Name: NF13893_low_2
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13893_low_2
NF13893_low_2
[»] chr8 (1 HSPs)
chr8 (10-682)||(30239519-30240189)


Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 10 - 682
Target Start/End: Complemental strand, 30240189 - 30239519
Alignment:
Q  10 attatactactttattactacctagagacttttaactactatttttgcaaagaaatatgcaatgtgacaaatggatgcaaaaacgtgtttcannnnnnnn 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  30240189 attatactactttattactacctagagacttttaactactatttttgcaaagaaatatgcaatgtgacaaatggatgcaaaaacgtgtttcatttttatt 30240090  T
Q  110 nnnncattcactaccactgaatgattataagtggaagataaagttctaatataacttactatatccatcgccattgccagtggatcgaagaatgtgataa 209  Q
        ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||     
T  30240089 tttccattcactaccactgaatgatta-aagtggaagataaagttctagtataacttactatatccatcgccattgccagtggattgaagaatgtgata- 30239992  T
Q  210 tattattatattcatcaataatgtccccttctatatcatagtagaaaacactcataggggttatgatcaccaccctacctgtaatccactgcgaattggg 309  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30239991 --ttattatattcatcaataatgtccccttctatatcatagtagaaaacactcataggggttatgatcaccaccctacctgtaatccactgcgaattggg 30239894  T
Q  310 tgaatggggtttggaccacaaggttccatccatcc--acaccaaaatgtcacaaactcatacctattggctccaatatttgaataataactactcttctg 407  Q
    ||||||||||||||||||||||||||||||||  |  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30239893 tgaatggggtttggaccacaaggttccatccacaccaaaaccaaaatgtcacaaactcatacctattggctccaatatttgaataataactactcttctg 30239794  T
Q  408 gttcattctcttcacaagctccatttatttctacactgcatttaatattctgctcaaatggtccatattgtgggatttttagtgctcatggaagtgctct 507  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30239793 gttcattctcttcacaggctccatttatttctacattgcatttaatattctgctcaaatggtccatattgtgggatttttagtgctcatggaagtgctct 30239694  T
Q  508 gattctgaccannnnnnnaaccaagtccaaacaaaatgaaacattttcatcggtcagattannnnnnnatcttttcatgacaccgactgaatcaatccaa 607  Q
    |||||||||||       |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  30239693 gattctgaccatttttttaaccaagtccaaacaaaatgaaacattttcatcggtcagattatttttttatcttttcatgacaccgactgaatcaatccaa 30239594  T
Q  608 ccctaccatccaattacttgggttgagtttttataccacctatgaccaaactcaccgcatgatatataatatagt 682  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30239593 ccctaccatccaattacttgggttgagtttttataccacctatgaccaaactcaccgcatgatatataatatagt 30239519  T

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