View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_22 (Length: 261)
Name: NF13893_low_22
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 2884918 - 2884685
Alignment:
| Q |
13 |
aatattcagacaatcaaaatatgtattcatgtaaagaaactagaaatttacctgacatatcttgaagatgtaaacaaaggaatttcttttcataagcaaa |
112 |
Q |
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| T |
2884918 |
aatattcagacaatcaaaatatatattcatgtaaagaaactagaaatttacctgacatatcttgaagatgtaaacaaaggaatttcttttcataagcaaa |
2884819 |
T |
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| Q |
113 |
tactctcttgaaaagttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgattcttagacttgtcaaatggaa |
212 |
Q |
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||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2884818 |
tactctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttagttgttaatgctgctggatgattcttagacttgtcaaatggaa |
2884719 |
T |
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| Q |
213 |
ttgcaagctcatctcctgttttccttccaacatg |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2884718 |
ttgcaagctcatctcctgttttccttccaacatg |
2884685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 2899686 - 2899875
Alignment:
| Q |
57 |
aatttacctgacatatcttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgaaaagttagcctttaatagttccttcttgttaac |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
2899686 |
aatttacctgacatatcttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaac |
2899785 |
T |
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| Q |
157 |
accatactttttagttgttaatgctgctggatgattcttagacttgtcaaatggaattgcaagctcatctcctgttttccttccaacatg |
246 |
Q |
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| T |
2899786 |
accgtactttttagttgttaatgctgctggatgattcttagacttgtcaaatggaattgcaagctcatctcttgttttccttccaacatg |
2899875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 2874992 - 2874841
Alignment:
| Q |
71 |
atcttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgaaaagttagcctttaatagttccttcttgttaacaccatactttttag |
170 |
Q |
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||||| |||| ||||| || ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874992 |
atcttaaagaggtaaatgaatgaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttag |
2874893 |
T |
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| Q |
171 |
ttgttaatgctgctggatgattcttagacttgtcaaatggaattgcaagctc |
222 |
Q |
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| T |
2874892 |
ttgttaatgctgctggatgattatttgacttgtcaaatggaatttcaagctc |
2874841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 44235886 - 44236023
Alignment:
| Q |
73 |
cttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgaaaagttagcctttaatagttccttcttgttaacaccatactttttagtt |
172 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| | |||||||| ||| || |
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| T |
44235886 |
cttgaagatgtaaacaaaggaatttcttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtg |
44235985 |
T |
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| Q |
173 |
gttaatgctgctggatgattcttagacttgtcaaatgg |
210 |
Q |
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|| || || |||||||| |||| | |||||||||||| |
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| T |
44235986 |
gtcaaagcagctggatggctcttcgtcttgtcaaatgg |
44236023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 44212911 - 44213048
Alignment:
| Q |
73 |
cttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgaaaagttagcctttaatagttccttcttgttaacaccatactttttagtt |
172 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| | |||||||| ||| || |
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| T |
44212911 |
cttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtg |
44213010 |
T |
|
| Q |
173 |
gttaatgctgctggatgattcttagacttgtcaaatgg |
210 |
Q |
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|| || || |||||||| |||| | |||||||||||| |
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| T |
44213011 |
gtcaaagcagctggatggctcttcgtcttgtcaaatgg |
44213048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 44225072 - 44225209
Alignment:
| Q |
73 |
cttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgaaaagttagcctttaatagttccttcttgttaacaccatactttttagtt |
172 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| | |||||||| ||| || |
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| T |
44225072 |
cttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtg |
44225171 |
T |
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| Q |
173 |
gttaatgctgctggatgattcttagacttgtcaaatgg |
210 |
Q |
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|| || || |||||||| |||| | |||||||||||| |
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| T |
44225172 |
gtcaaagcagctggatggctcttcgtcttgtcaaatgg |
44225209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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