View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_24 (Length: 256)
Name: NF13893_low_24
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 36900233 - 36900008
Alignment:
| Q |
13 |
tgaacgtctttgaaggtaacacggaggccatgaggtggccgagggggagtgtggcgacttgaacggtgatttgagttatgatgagtggttcggttcggta |
112 |
Q |
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| T |
36900233 |
tgaacgtctttgaaggtaacacggaggccatgaggtggccgagggggagtgtggcgacttgaacggtgatttgagttatgatgagtggttcggttcggta |
36900134 |
T |
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| Q |
113 |
tgcgaagaattggttgagaaaggagaggagagcgcatgagagaagacctagaaaccacatgcggaaggtccatactggaagtgttgggtcgtcggnnnnn |
212 |
Q |
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| T |
36900133 |
tgcgaagaattggttgagaaaggagaggagagcgcatgagagaagacctagaaaccacatgcggaaggtccatactggaagtgttgggtcgtcggttttt |
36900034 |
T |
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| Q |
213 |
nncaccgttaaccggacttcctcgat |
238 |
Q |
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| T |
36900033 |
ttcaccgttaaccggacttcctcgat |
36900008 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 2176185 - 2176335
Alignment:
| Q |
57 |
gggagtgtggcgacttgaacggtgatttgagttatgatgagtggttcggttcggtatgcgaagaattggttgagaaaggagaggagagcgcatgagagaa |
156 |
Q |
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| T |
2176185 |
gggagtgtagctacctgaacggttatgagagtgatgatgagtggttctgtacggtaagcgaagaattggttgaggaaagaaaggagtgagcatgaaatga |
2176284 |
T |
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| Q |
157 |
gacctagaaaccacatgcggaaggtccatactggaagtgttgggtcgtcgg |
207 |
Q |
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| T |
2176285 |
gacctaagaaccacatacggaatgtccatactggttgggttgggtcgtcgg |
2176335 |
T |
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