View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_26 (Length: 242)
Name: NF13893_low_26
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 24525046 - 24524842
Alignment:
| Q |
21 |
tcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24525046 |
tcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgtcttgcat |
24524947 |
T |
|
| Q |
121 |
tggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24524946 |
tggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagac |
24524847 |
T |
|
| Q |
221 |
atatt |
225 |
Q |
| |
|
||||| |
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|
| T |
24524846 |
atatt |
24524842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 24531719 - 24531515
Alignment:
| Q |
21 |
tcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24531719 |
tcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtcccttggcctagtaaggtgtcttgcat |
24531620 |
T |
|
| Q |
121 |
tggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24531619 |
tggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagac |
24531520 |
T |
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| Q |
221 |
atatt |
225 |
Q |
| |
|
||||| |
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|
| T |
24531519 |
atatt |
24531515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 289992 - 289788
Alignment:
| Q |
21 |
tcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
289992 |
tcatgtaccataaataatcactagctccagcggtaacattcttttgatttaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcat |
289893 |
T |
|
| Q |
121 |
tggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagac |
220 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||| |
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| T |
289892 |
tggttcggatgcccattcccacttgagtgtgtttcctaatgaacaagtacacaacaatgctaaacatgcagtaagaaatatactaaaccttggattagac |
289793 |
T |
|
| Q |
221 |
atatt |
225 |
Q |
| |
|
||||| |
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|
| T |
289792 |
atatt |
289788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 279547 - 279432
Alignment:
| Q |
21 |
tcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcat |
120 |
Q |
| |
|
|||||||||| || ||||||||||| ||| | |||||| |||||||||||||||||| ||||||||||||||||||||| ||| | || ||||||| ||| |
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| T |
279547 |
tcatgtaccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccat |
279448 |
T |
|
| Q |
121 |
tggttcagatgcccat |
136 |
Q |
| |
|
||| || |||| |||| |
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| T |
279447 |
tgggtcggatgtccat |
279432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 278176 - 278110
Alignment:
| Q |
159 |
atgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatt |
225 |
Q |
| |
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|||||||||| |||| |||||||| |||||| |||||||||| | |||| ||| |||||||||||| |
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| T |
278176 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacatagcattagacatatt |
278110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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