View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13893_low_28 (Length: 237)

Name: NF13893_low_28
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13893_low_28
NF13893_low_28
[»] chr1 (2 HSPs)
chr1 (101-230)||(13397404-13397532)
chr1 (1-70)||(13397532-13397603)
[»] chr7 (1 HSPs)
chr7 (7-105)||(6691804-6691906)
[»] chr6 (3 HSPs)
chr6 (31-105)||(796915-796989)
chr6 (31-105)||(8272838-8272912)
chr6 (118-230)||(8272951-8273067)
[»] chr5 (2 HSPs)
chr5 (31-105)||(19943782-19943856)
chr5 (107-230)||(19943884-19944011)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 13397532 - 13397404
Alignment:
Q  101 caacatatgatgtctctaagagatacaaatcccgaatagtggtcaaggattctaacaaaacgaagaattttactatgaaatttttgctccaatagttaag 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||    
T  13397532 caacatatgatgtctctaagagatacaaatcccgaatggtggtcaaggattctagcaaaaggaagaattttactatgaaa-ttttgttccaatagttaag 13397434  T
Q  201 ctcaatactatcatgtttctattaagtatt 230  Q
    ||||||||||||||||||||||||||||||    
T  13397433 ctcaatactatcatgtttctattaagtatt 13397404  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13397603 - 13397532
Alignment:
Q  1 tgtgcaagtaagtggaagctttccatgaaaaaa--taaagtctttgatctccgatcatacgtgggaacaagc 70  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  13397603 tgtgcaagtaagtggaagctttccatgaaaaaaaataaagtctttgatctctgatcatacgtgggaacaagc 13397532  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 6691804 - 6691906
Alignment:
Q  7 agtaagtggaagctttccatgaaa----aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcaca 102  Q
    ||||||||| ||||| ||||||||    |||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| ||||||||    
T  6691804 agtaagtgggagcttgccatgaaagaggaaatgaagtctttgatctccaatcagacatgggagctagctaagttacccataggaaagaaggcacttcaca 6691903  T
Q  103 aca 105  Q
    |||    
T  6691904 aca 6691906  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 796989 - 796915
Alignment:
Q  31 aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca 105  Q
    |||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| |||||||||||    
T  796989 aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca 796915  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 8272838 - 8272912
Alignment:
Q  31 aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca 105  Q
    |||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| |||||||||||    
T  8272838 aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca 8272912  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 8272951 - 8273067
Alignment:
Q  118 aagagatacaaatcccgaatagtggtcaa-ggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagctcaatactatca 213  Q
    |||||||||||| ||||| |||||||||| |||||| | ||||| |||| | || ||||   ||| |||||||||||| | || ||||||||||||||||    
T  8272951 aagagatacaaagcccgactagtggtcaaaggattccagcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagctcaatactatca 8273050  T
Q  214 tgtttctattaagtatt 230  Q
     || | | |||||||||    
T  8273051 ggtctgtcttaagtatt 8273067  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 19943782 - 19943856
Alignment:
Q  31 aaataaagtctttgatctccgatcatacgtgggaacaagctaagttactcataggaaagaaggaacttcacaaca 105  Q
    |||| ||||||||||||||| |||| || ||||| | ||||||||||| |||||||||||||| |||||||||||    
T  19943782 aaatgaagtctttgatctccaatcaaacatgggagctagctaagttacccataggaaagaaggcacttcacaaca 19943856  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 19943884 - 19944011
Alignment:
Q  107 atgatgtctctaagagatacaaatcccgaatagtggtc-aaggattctaacaaaacgaagaattttacta---tgaaatttttgctccaatagttaagct 202  Q
    |||||| ||| |||||||||||| ||||| |||||||| |||||||| | ||||| |||| | || ||||   ||| |||||||||||| | || |||||    
T  19943884 atgatggctcaaagagatacaaagcccgactagtggtcaaaggattccagcaaaaggaaggaattgactacactgagatttttgctccagtggtgaagct 19943983  T
Q  203 caatactatcatgtttctattaagtatt 230  Q
    ||||||||||| || | | |||||||||    
T  19943984 caatactatcaggtctgtcttaagtatt 19944011  T

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