View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13893_low_29 (Length: 212)

Name: NF13893_low_29

Description: NF13893

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13893_low_29

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 173; E-Value: 3e-93

Query Start/End: Original strand, 9 - 193

Target Start/End: Original strand, 36745223 - 36745407

Alignment:

Q	9	gatgtcgaagaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg	108	Q
		\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36745223	gatggcgaaaaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg	36745322	T

Q	109	taaatgacgcctgctttcaccaactcatgagtcactggttgaatacccattgcgtgattgagccattcatcatagctacaaatag	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36745323	taaatgacgcctgctttcaccaactcatgagtcactggttgaatacacattgcgtgattgagccattcatcatagctacaaatag	36745407	T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 75 - 147

Target Start/End: Original strand, 9605326 - 9605398

Alignment:

Q	75	acaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggt	147	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	9605326	acaatttggctattggccaaggctcatgtaattgtaaatgattcatgctaccatcaactcatgagccactggt	9605398	T

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