View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13893_low_4 (Length: 564)
Name: NF13893_low_4
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 35 - 542
Target Start/End: Complemental strand, 50255879 - 50255372
Alignment:
| Q |
35 |
ggacatcatcatctcaggtgctgaaaatatcagcagtgtagaggtagagaatgctctgtactcgcatcctgctatacttgagacatcagtggtcgctaga |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255879 |
ggacatcatcatctcaggtgctgaaaatatcagcagtgtagaggtagagaatgctctgtactcgcatcctgctatacttgagacatcagtggtcgctaga |
50255780 |
T |
|
| Q |
135 |
ccagacgagaaatggggcgagtctccgtgtgcgtttgtgacattaaagccaggagtggataggagtaacgagcaacgtctagtcgaggacatactgaagt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255779 |
ccagacgagaaatggggcgagtctccgtgtgcgtttgtgacattaaagccaggagtggataggagtaacgagcaacgtctagtcgaggacatactgaagt |
50255680 |
T |
|
| Q |
235 |
tctgtagggccaagatgcctacttattgggtaccgaaatcagttgtctttggaccgttacctaagacagctactgggaaggtacagaagcatctgctgag |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255679 |
tctgtagggccaagatgcctacttattgggtaccgaaatcggttgtctttggaccgttacctaagacagctactgggaaggtacagaagcatctgctgag |
50255580 |
T |
|
| Q |
335 |
ggctaaggcaaaggagatgggacctctcaagatgagcaagttgtaatcatattagagtgataatgtcgataaaagctacttgttcttgctggtatgtgat |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50255579 |
ggctaaggcaaaggagatgggacctctcaagacgagcaagttgtaatcatattagagtgataatgtcgataaaagctacttgttcttgctggtatgtgat |
50255480 |
T |
|
| Q |
435 |
gtgttattagaatttgtaataatcagtaagatttagtgttctataataataaaagcttttagctgttcttaaaagcagctcaatgtttttatcccattat |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50255479 |
gtgttattagaatttgtaataatcagtaagaattagtgttctataataataaaagcttttagctgttcttaaaagcagctcaatgtttttatctcattat |
50255380 |
T |
|
| Q |
535 |
gcaatttg |
542 |
Q |
| |
|
|||||||| |
|
|
| T |
50255379 |
gcaatttg |
50255372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 45 - 384
Target Start/End: Original strand, 19213661 - 19214000
Alignment:
| Q |
45 |
atctcaggtgctgaaaatatcagcagtgtagaggtagagaatgctctgtactcgcatcctgctatacttgagacatcagtggtcgctagaccagacgaga |
144 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| |||||| | || ||||||| |||| ||| ||| | || |||||||||| || || ||||| |||| |
|
|
| T |
19213661 |
atctcaggtggtgaaaatattagcagtgtagaaatagagagtactttgtactcacatcatgcaatattggaagcatcagtggttgcaaggccagatgaga |
19213760 |
T |
|
| Q |
145 |
aatggggcgagtctccgtgtgcgtttgtgacattaaagccaggagtggataggagtaacgagcaacgtctagtcgaggacatactgaagttctgtagggc |
244 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||||||||| |||||||||| ||||| || | || |||| ||||| ||| ||| || |||| ||| |
|
|
| T |
19213761 |
aatggggtgagtctccatgtgcatttgtgacattaaagccaagagtggatagtagtaatgaaaagtgtttagttgaggatatattgagtttttgtaaggc |
19213860 |
T |
|
| Q |
245 |
caagatgcctacttattgggtaccgaaatcagttgtctttggaccgttacctaagacagctactgggaaggtacagaagcatctgctgagggctaaggca |
344 |
Q |
| |
|
|||||| || ||||| ||| || ||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
19213861 |
taagatgtcttcttatatggtcccaaaatcagttgtgtttggaccattacctaagacagctactgggaagatacagaagaatctgttgagggctaaggca |
19213960 |
T |
|
| Q |
345 |
aaggagatgggacctctcaagatgagcaagttgtaatcat |
384 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
19213961 |
aaggagatggggtctgccaagatgagcaagttgtaatcat |
19214000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University