View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_6 (Length: 496)
Name: NF13893_low_6
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Original strand, 3722939 - 3723405
Alignment:
| Q |
15 |
ttcactggttgaatagtgacatctattatgaattttctaaagaaggtggtcgaataaacttataccaaataaaaatttaatggattttatgccttttcat |
114 |
Q |
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| T |
3722939 |
ttcactggttgaatagtgatatctattatgaattttctaaagaaggtggtcgaataaacttataccaaataaaaatttaatggattttatgccttttcat |
3723038 |
T |
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| Q |
115 |
tcttctatccattcacactaataatgaccatacaagtaagtaagcaaatggttccctttcatttttagaattagaagcttcaatcattcaatcatacaag |
214 |
Q |
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| T |
3723039 |
tcttctatccattcacactaataatgaccatacaagtaagtaagcaaatggttccctttcatttttagaattagaagcttcaatcattcaatcatacaag |
3723138 |
T |
|
| Q |
215 |
taagaaggtgtatttttcacttaaaagttgtaataaatttaactaattcatttgttcttttataaaacaatgcaaagtaattttcctacatacatataag |
314 |
Q |
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| T |
3723139 |
taagaaggtgtattttttacttaacagttgtaataaatttaactaattcatttgttcttttataaaacaatgtaaagtaattttcctgcatacatataag |
3723238 |
T |
|
| Q |
315 |
gagcaagtaagtattttatcaaacaaaacaaactgtcaacacagaagaatttttcaatgtacctaaattcacatgaacatcatcatcaactttgacataa |
414 |
Q |
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| T |
3723239 |
gagcaagtaagaattttatcaaacaaaacaaactgtaaacgcagaagaatttttcaatgtacctaaattcacatgaacatcatcatcaactttgacataa |
3723338 |
T |
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| Q |
415 |
aattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaat |
481 |
Q |
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| T |
3723339 |
aattctgcatcccacaaggcaagaacagttgaaaaataggttttcgtcttagctgatagttccaaat |
3723405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 17124808 - 17124754
Alignment:
| Q |
374 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatccca |
428 |
Q |
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| T |
17124808 |
tacctatatttacatgaacatcgtcatcaactttgacataaaaatcagcatccca |
17124754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 472
Target Start/End: Original strand, 37186385 - 37186483
Alignment:
| Q |
374 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgata |
472 |
Q |
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| T |
37186385 |
tacctatatttacatgaacatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgata |
37186483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 33084487 - 33084541
Alignment:
| Q |
374 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatccca |
428 |
Q |
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| T |
33084487 |
tacctaaattgacatgaacatcgtcatctactttgacatagaaatcagcatccca |
33084541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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