View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13893_low_8 (Length: 470)
Name: NF13893_low_8
Description: NF13893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13893_low_8 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 164267 - 164702
Alignment:
| Q |
18 |
atctccatgataacagttaaagaattctaattataaaccataatagaaagcttataactagtgatagtcatgcgatgttatccaatacaatatacatgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
164267 |
atctccatgataacagttaaagaattctaattataaaccataatagaaagcttataactagtgatagtcatgcgatattatccaatacaatatacatgtg |
164366 |
T |
|
| Q |
118 |
aaatgaatcgagagtttattctatctgattttcacctttgttttttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164367 |
aaatgaatcgagagtttattctatctgattttcacctttgttttttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttg |
164466 |
T |
|
| Q |
218 |
tacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164467 |
tacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcac |
164566 |
T |
|
| Q |
318 |
gccacctatgtgcaaaggttagaatctttatctttaatttatcacaatgtgtgaaattacacatcctttttaacataggagggataatgatccattttat |
417 |
Q |
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| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164567 |
gtcacctatgtgcaaaggttagagtctttatctttaattgatcacaatgtgtgaaattacacatcctttttaacataggagggataatgatccattttat |
164666 |
T |
|
| Q |
418 |
gtctcataggaagatctttactatccccatcctttg |
453 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
164667 |
gtctcataggaagatctttactatccccatcctttg |
164702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 165 - 453
Target Start/End: Original strand, 103448 - 103742
Alignment:
| Q |
165 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
264 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
103448 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagtt |
103547 |
T |
|
| Q |
265 |
gagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggttagaatctttatctttaatttatcacaa |
364 |
Q |
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|||||||||||||||||| || ||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| || || ||||||||| | |||| |
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| T |
103548 |
gagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaattgtttacaa |
103647 |
T |
|
| Q |
365 |
tgtgtgaaattacacatcctttttaac------ataggagggataatgatccattttatgtctcataggaagatctttactatccccatcctttg |
453 |
Q |
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|||||| | |||||| |||| |||| | |||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
103648 |
tgtgtggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccccatcctttg |
103742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 137 - 453
Target Start/End: Complemental strand, 92882 - 92566
Alignment:
| Q |
137 |
tctatctgattttcacctttgtttt-ttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgta |
235 |
Q |
| |
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||||||||||||||| || |||| || |||||||||||||||| |||||||| | |||||| | |||||||||||||||||||| ||||||||||| |
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| T |
92882 |
tctatctgattttcatctaagtttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtc |
92783 |
T |
|
| Q |
236 |
ggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaagg |
335 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||| ||| |||| ||| ||||||||||||||||||||| |
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| T |
92782 |
ggtccaatcacaccactcgtcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaagg |
92683 |
T |
|
| Q |
336 |
ttagaatctttatctttaatttatcacaatgtgtgaaattacacatcctttttaacataggagggataatgatccattttatgtctc-ataggaagatct |
434 |
Q |
| |
|
| || ||||| ||| ||||| || ||| ||| |||| |||||||| || |||||| || ||||||||||| ||||||||||| ||| | |||||||| | |
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| T |
92682 |
tgaggctctttgtctctaattcatgacagtgtatgaatttacacat-ctctttaacgtatgagggataatgttccattttatg-ctcaacaggaagatat |
92585 |
T |
|
| Q |
435 |
ttactatccccatcctttg |
453 |
Q |
| |
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|||||||| ||||||||| |
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| T |
92584 |
ctactatcctcatcctttg |
92566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 163 - 336
Target Start/End: Complemental strand, 5670533 - 5670360
Alignment:
| Q |
163 |
tacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacag |
262 |
Q |
| |
|
|||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||||||||| || |
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| T |
5670533 |
tacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaag |
5670434 |
T |
|
| Q |
263 |
ttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
336 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||| ||||||| ||| |||||| |||||||||||||| |
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| T |
5670433 |
ttgagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggt |
5670360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 164 - 336
Target Start/End: Complemental strand, 5722646 - 5722474
Alignment:
| Q |
164 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
263 |
Q |
| |
|
||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | |||||| ||| |
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|
| T |
5722646 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagt |
5722547 |
T |
|
| Q |
264 |
tgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
336 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||||||| ||| ||| ||||||||||||||||| |
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|
| T |
5722546 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggt |
5722474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 336
Target Start/End: Complemental strand, 5692306 - 5692134
Alignment:
| Q |
164 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
263 |
Q |
| |
|
||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | | |||| ||| |
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|
| T |
5692306 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagt |
5692207 |
T |
|
| Q |
264 |
tgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
336 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||||||| ||| |||||| |||||||||||||| |
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|
| T |
5692206 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggt |
5692134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 453
Target Start/End: Complemental strand, 5692005 - 5691977
Alignment:
| Q |
425 |
aggaagatctttactatccccatcctttg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
5692005 |
aggaagatctttactatccccatcctttg |
5691977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 453
Target Start/End: Complemental strand, 5722392 - 5722364
Alignment:
| Q |
425 |
aggaagatctttactatccccatcctttg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5722392 |
aggaagatctttactatccccatcctttg |
5722364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 169 - 336
Target Start/End: Original strand, 13052377 - 13052544
Alignment:
| Q |
169 |
taaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgaga |
268 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
13052377 |
taaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgaga |
13052476 |
T |
|
| Q |
269 |
gaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaaggt |
336 |
Q |
| |
|
|||||| | |||| |||||||| |||||| | ||||| |||||||| |||| |||||||||||| |
|
|
| T |
13052477 |
gaagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggt |
13052544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 13052576 - 13052645
Alignment:
| Q |
390 |
acataggagggataa-tgatccattttatgtc---tcata--ggaagatctttactatccccatcctttg |
453 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||||||| |
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|
| T |
13052576 |
acataggagggataaatgatccattttatgtcgtctcatacaggaagatctttactatcctcatcctttg |
13052645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 165 - 308
Target Start/End: Complemental strand, 12137849 - 12137706
Alignment:
| Q |
165 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
264 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||||| ||| | |||||||| |||||||||||||| |
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|
| T |
12137849 |
cagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagtt |
12137750 |
T |
|
| Q |
265 |
gagagaagaactccatacccaaccttatgaaaaaactaattgga |
308 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||| |||||||| |
|
|
| T |
12137749 |
gagagaagaactctatactgaaccttatgcaaaagttaattgga |
12137706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
201 |
tgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacacca |
250 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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