View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13894_high_2 (Length: 463)

Name: NF13894_high_2
Description: NF13894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13894_high_2
NF13894_high_2
[»] chr8 (9 HSPs)
chr8 (238-463)||(25933516-25933741)
chr8 (386-463)||(26101035-26101112)
chr8 (22-84)||(12605623-12605685)
chr8 (21-83)||(38445262-38445324)
chr8 (21-82)||(44440938-44440999)
chr8 (235-267)||(13051434-13051466)
chr8 (21-80)||(25925888-25925947)
chr8 (232-274)||(40902398-40902440)
chr8 (232-281)||(16956689-16956738)
[»] chr7 (15 HSPs)
chr7 (13-263)||(7126887-7127137)
chr7 (239-283)||(49057324-49057368)
chr7 (32-83)||(41489953-41490004)
chr7 (238-276)||(8585154-8585192)
chr7 (32-82)||(23721200-23721250)
chr7 (32-82)||(30898982-30899032)
chr7 (238-276)||(36092602-36092640)
chr7 (21-83)||(43295490-43295552)
chr7 (234-267)||(3973227-3973260)
chr7 (232-309)||(19254589-19254666)
chr7 (50-83)||(28359164-28359197)
chr7 (50-82)||(10406578-10406610)
chr7 (44-84)||(12305039-12305079)
chr7 (232-276)||(31374822-31374866)
chr7 (235-267)||(41489951-41489983)
[»] chr4 (13 HSPs)
chr4 (21-83)||(28496496-28496558)
chr4 (32-85)||(22870716-22870769)
chr4 (385-442)||(29549064-29549121)
chr4 (17-73)||(26806556-26806612)
chr4 (216-267)||(50816529-50816583)
chr4 (232-267)||(29113506-29113541)
chr4 (21-83)||(3586138-3586200)
chr4 (122-167)||(25324155-25324200)
chr4 (231-280)||(28496504-28496553)
chr4 (238-267)||(34206005-34206034)
chr4 (33-73)||(18435927-18435967)
chr4 (50-90)||(28232086-28232126)
chr4 (123-167)||(30305429-30305473)
[»] chr6 (7 HSPs)
chr6 (186-263)||(35236522-35236601)
chr6 (232-267)||(19712621-19712656)
chr6 (34-83)||(18286662-18286711)
chr6 (238-267)||(24558851-24558880)
chr6 (232-276)||(5269276-5269320)
chr6 (122-174)||(12268944-12268996)
chr6 (33-73)||(30539483-30539523)
[»] chr3 (9 HSPs)
chr3 (122-161)||(13825067-13825106)
chr3 (27-84)||(34250342-34250399)
chr3 (237-276)||(45941136-45941175)
chr3 (238-276)||(5440680-5440718)
chr3 (32-82)||(40337868-40337918)
chr3 (238-267)||(13769303-13769332)
chr3 (232-276)||(31606488-31606532)
chr3 (29-73)||(50057088-50057132)
chr3 (32-80)||(51917942-51917990)
[»] chr1 (17 HSPs)
chr1 (21-83)||(31789400-31789462)
chr1 (29-93)||(32752356-32752419)
chr1 (215-276)||(32752377-32752441)
chr1 (21-82)||(1289640-1289701)
chr1 (232-265)||(7525044-7525077)
chr1 (232-265)||(17557737-17557770)
chr1 (238-267)||(33879790-33879819)
chr1 (238-267)||(33964436-33964465)
chr1 (238-267)||(35926260-35926289)
chr1 (238-271)||(36326969-36327002)
chr1 (238-267)||(45403503-45403532)
chr1 (232-276)||(369657-369701)
chr1 (231-259)||(33248345-33248373)
chr1 (231-259)||(33268517-33268545)
chr1 (232-276)||(43361555-43361599)
chr1 (240-276)||(43938911-43938947)
chr1 (186-263)||(52923734-52923813)
[»] chr2 (13 HSPs)
chr2 (232-273)||(21374291-21374332)
chr2 (44-83)||(9889310-9889349)
chr2 (232-275)||(29684068-29684111)
chr2 (32-83)||(36901204-36901255)
chr2 (32-83)||(36901438-36901489)
chr2 (123-173)||(7748149-7748199)
chr2 (215-264)||(11967137-11967189)
chr2 (29-83)||(26760818-26760872)
chr2 (238-267)||(15061277-15061306)
chr2 (234-267)||(25621297-25621330)
chr2 (238-274)||(7877907-7877943)
chr2 (238-274)||(30156271-30156307)
chr2 (33-73)||(40010037-40010077)
[»] scaffold0060 (1 HSPs)
scaffold0060 (232-267)||(20597-20632)
[»] chr5 (8 HSPs)
chr5 (233-276)||(15286912-15286955)
chr5 (232-267)||(37781856-37781891)
chr5 (32-82)||(904745-904795)
chr5 (32-82)||(4796420-4796470)
chr5 (232-274)||(28156087-28156129)
chr5 (33-73)||(2716609-2716649)
chr5 (231-267)||(2722009-2722045)
chr5 (122-170)||(31974358-31974406)
[»] scaffold0245 (1 HSPs)
scaffold0245 (21-82)||(16045-16106)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 238 - 463
Target Start/End: Complemental strand, 25933741 - 25933516
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggataaattagactcaacattaaacttaatataatatcagagtctaagaatgagataatccggatataaaacct 337  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25933741 cctcaccttacaagctggttttgtaaggatgaattagactcaacattaaacttaatataatatcagagtctaagaatgagataatccggatataaaacct 25933642  T
Q  338 aataacaagcacaccaaattcaacgatttatacacaacagcatggaatgaacctgtgggtcatttacgacaaaacgaacaggtgaagcagtatgaaagac 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25933641 aataacaagcacaccaaattcaacgatttatacacaacagcatggaatgaacctgtgggtcatttacgacaaaacgaacaggtgaagcagtatgaaagac 25933542  T
Q  438 accatcacaaccctcaacaacagagt 463  Q
    ||||||||||||||||||||||||||    
T  25933541 accatcacaaccctcaacaacagagt 25933516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 386 - 463
Target Start/End: Complemental strand, 26101112 - 26101035
Alignment:
Q  386 gaacctgtgggtcatttacgacaaaacgaacaggtgaagcagtatgaaagacaccatcacaaccctcaacaacagagt 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26101112 gaacctgtgggtcatttacgacaaaacgaacaggtgaagcagtatgaaagacaccatcacaaccctcaacaacagagt 26101035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 12605623 - 12605685
Alignment:
Q  22 agagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaa 84  Q
    |||||| ||||||||| |||| || || |||||||||||||| |||||||| |||||||||||    
T  12605623 agagtggcacccctcaccttacaaaccggttttgtaaggatgagttaggccaaatataaaaaa 12605685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 38445262 - 38445324
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||||||||| |||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  38445262 aagagtgacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaa 38445324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 44440938 - 44440999
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||||||||||||| |||| |||||  ||||| ||||||| |||||||| |||||||||    
T  44440938 aagagtgacacccctcaccttacaagccgattttggaaggatgagttaggcctaatataaaa 44440999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 13051466 - 13051434
Alignment:
Q  235 aaccctcaccttacaagctggttttgtaaggat 267  Q
    |||||||||||||||||||||||||||||||||    
T  13051466 aaccctcaccttacaagctggttttgtaaggat 13051434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 25925888 - 25925947
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataa 80  Q
    ||||||| |||||||||||||| || |  ||||||||| |||| ||||||||||||||||    
T  25925888 aagagtggcacccctcatcttacaacctggttttgtaaagatgagttaggcccaatataa 25925947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 40902440 - 40902398
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattag 274  Q
    ||||| ||||||||||||||| |||||||||||||||| ||||    
T  40902440 ggcaatcctcaccttacaagccggttttgtaaggataagttag 40902398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 16956689 - 16956738
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattagactcaac 281  Q
    |||| ||||||||||||||| ||||||||||||||| | |||||| ||||    
T  16956689 ggcagccctcaccttacaaggtggttttgtaaggatgagttagacccaac 16956738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 7126887 - 7127137
Alignment:
Q  13 aatattataagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaacataatatgtaccagcgcctatcaaatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7126887 aatattataagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaatcataatatgtaccagcgcctatcaaatg 7126986  T
Q  113 gggccaccgccatttatatctacgcaccaaatccaataatgttgggtgtgaggggtgtattgnnnnnnnccagaagtcccacataggataaagatgaagt 212  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||    
T  7126987 gggccaccatcatttatatctacgcaccaaatccaataatgttgggtgtgaggggtatattgagaaaaaccagaagtcccacataggataaagatgaagt 7127086  T
Q  213 tagaaatgagtttataaatggcaaccctcaccttacaagctggttttgtaa 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127087 tagaaatgagtttataaatggcaaccctcaccttacaagctggttttgtaa 7127137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 49057324 - 49057368
Alignment:
Q  239 ctcaccttacaagctggttttgtaaggataaattagactcaacat 283  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||    
T  49057324 ctcaccttacaagttggttttgtaaggatgagttagactcaacat 49057368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 41489953 - 41490004
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||| |||| ||||| |||||||||||||| | |||||||||||||||||    
T  41489953 ccctcaccttacaagccggttttgtaaggatgagctaggcccaatataaaaa 41490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 8585154 - 8585192
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggataaattagac 276  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  8585154 cctcaccttacaagctggttttgtaaggatgagttagac 8585192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 23721200 - 23721250
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| ||||| |||| ||||||||| ||||||||||||||||||    
T  23721200 ccctcaccttaaaagccggtttagtaaggatgagttaggcccaatataaaa 23721250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 30899032 - 30898982
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||||||| ||||| ||||| || ||||| ||||||||||||||||||    
T  30899032 ccctcatcttacaagccggttttttacggatgagttaggcccaatataaaa 30898982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 36092640 - 36092602
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggataaattagac 276  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  36092640 cctcaccttacaagctggttttgtaaggatgagttagac 36092602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 43295490 - 43295552
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||| ||| ||||| ||||  |||| | |||||||||||| |||||||||||||||||||    
T  43295490 aagagtggcactcctcaccttaccagccggatttgtaaggatgagttaggcccaatataaaaa 43295552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 3973227 - 3973260
Alignment:
Q  234 caaccctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||| ||||||||||||||    
T  3973227 caaccctcaccttacaagccggttttgtaaggat 3973260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 19254589 - 19254666
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattagactcaacattaaacttaatataatatcagagtcta 309  Q
    |||| |||||||||||||||  |||||||||||||| | ||||||| || || |||| ||| ||  ||||||||||||    
T  19254589 ggcatccctcaccttacaagtcggttttgtaaggattagttagactaaatataaaacctaagatggtatcagagtcta 19254666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 28359164 - 28359197
Alignment:
Q  50 gttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||||||||||| |||||||||||||||||||    
T  28359164 gttttgtaaggatgagttaggcccaatataaaaa 28359197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 10406610 - 10406578
Alignment:
Q  50 gttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||||||||||| ||||||||||||||||||    
T  10406610 gttttgtaaggatgagttaggcccaatataaaa 10406578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 12305079 - 12305039
Alignment:
Q  44 aagcccgttttgtaaggatgtgttaggcccaatataaaaaa 84  Q
    ||||| ||| |||||||||| ||||||||||||||||||||    
T  12305079 aagccggttctgtaaggatgagttaggcccaatataaaaaa 12305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 31374822 - 31374866
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    ||||| ||||||||||||||| |||||||||||||| | ||||||    
T  31374822 ggcaatcctcaccttacaagccggttttgtaaggatgagttagac 31374866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 41489951 - 41489983
Alignment:
Q  235 aaccctcaccttacaagctggttttgtaaggat 267  Q
    |||||||||||||||||| ||||||||||||||    
T  41489951 aaccctcaccttacaagccggttttgtaaggat 41489983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 28496558 - 28496496
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||| ||||||||| |||| ||||| |||||||||||||| ||||||| |||||||||||    
T  28496558 aagagtggcacccctcaccttacaagccggttttgtaaggatgagttaggctcaatataaaaa 28496496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 22870716 - 22870769
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaac 85  Q
    |||||||||||||||||  |||| |||||||| |||||||||||||||||||||    
T  22870716 ccctcatcttataagccgattttataaggatgagttaggcccaatataaaaaac 22870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 29549121 - 29549064
Alignment:
Q  385 tgaacctgtgggtcatttacgacaaaacgaacaggtgaagcagtatgaaagacaccat 442  Q
    |||||||| |||||  | ||||||||| |||| |||||||||||||||||||||||||    
T  29549121 tgaacctgagggtcggtgacgacaaaatgaacgggtgaagcagtatgaaagacaccat 29549064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 26806556 - 26806612
Alignment:
Q  17 ttataagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||||||| ||||| ||||| |||| ||||| |||||||||||||| |||||||||    
T  26806556 ttataagagagacactcctcaacttacaagccagttttgtaaggatgagttaggccc 26806612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 50816583 - 50816529
Alignment:
Q  216 aaatgagtttataaatgg---caaccctcaccttacaagctggttttgtaaggat 267  Q
    |||||| |||||||||||   ||| ||||||||||||||||||||||||||||||    
T  50816583 aaatgaatttataaatgggggcaatcctcaccttacaagctggttttgtaaggat 50816529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 29113506 - 29113541
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggat 267  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29113506 ggcaatcctcaccttacaagctggttttgtaaggat 29113541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 3586138 - 3586200
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||||||||||||| |||| || ||  ||||||||||||| ||||  |||||||||||||    
T  3586138 aagagtgacacccctcaccttacaaaccaattttgtaaggatgagttaaccccaatataaaaa 3586200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 25324200 - 25324155
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgtgagggg 167  Q
    |||||||||||||||||||||  |||||| | ||||||||||||||    
T  25324200 ccatttatatctacgcaccaagcccaatagtattgggtgtgagggg 25324155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 28496553 - 28496504
Alignment:
Q  231 tggcaaccctcaccttacaagctggttttgtaaggataaattagactcaa 280  Q
    ||||| |||||||||||||||| |||||||||||||| | |||| |||||    
T  28496553 tggcacccctcaccttacaagccggttttgtaaggatgagttaggctcaa 28496504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 34206034 - 34206005
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  34206034 cctcaccttacaagctggttttgtaaggat 34206005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 18435967 - 18435927
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||| |||| ||||| ||||||||||||||||||||||||    
T  18435967 cctcaccttacaagccggttttgtaaggatgtgttaggccc 18435927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 28232126 - 28232086
Alignment:
Q  50 gttttgtaaggatgtgttaggcccaatataaaaaacataat 90  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  28232126 gttttgtaaggatgagttagacccaatataaaaaaaataat 28232086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 30305429 - 30305473
Alignment:
Q  123 catttatatctacgcaccaaatccaataatgttgggtgtgagggg 167  Q
    ||||||||| || ||||||||||||||| ||||||| ||||||||    
T  30305429 catttatatttatgcaccaaatccaatagtgttgggcgtgagggg 30305473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 35236601 - 35236522
Alignment:
Q  186 aagtcccacataggataaagatgaagttagaaatgagtttataaa--tggcaaccctcaccttacaagctggttttgtaa 263  Q
    |||||||||||||||| ||||| | ||  ||||||||||||||||  || || ||||||||||||||| |||||||||||    
T  35236601 aagtcccacataggatgaagataacgtatgaaatgagtttataaaagtgacacccctcaccttacaagttggttttgtaa 35236522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 19712656 - 19712621
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggat 267  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19712656 ggcaatcctcaccttacaagctggttttgtaaggat 19712621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 18286662 - 18286711
Alignment:
Q  34 ctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||| |||| |||||  ||||||||||||| |||||||||||||||||||    
T  18286662 ctcaccttacaagccaattttgtaaggatgagttaggcccaatataaaaa 18286711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 24558851 - 24558880
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  24558851 cctcaccttacaagctggttttgtaaggat 24558880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 5269320 - 5269276
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    ||||| ||||||||||||||| |||||||||||||| | ||||||    
T  5269320 ggcaatcctcaccttacaagccggttttgtaaggatgagttagac 5269276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 12268944 - 12268996
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgtgaggggtgtattg 174  Q
    ||||||||||  |||||||||| |||||| |||||||  ||||||||||||||    
T  12268944 ccatttatatacacgcaccaaacccaatagtgttgggcatgaggggtgtattg 12268996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 30539483 - 30539523
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  30539483 cctcatcttataacccggttttgtaaggatgggttaggccc 30539523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 13825067 - 13825106
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgt 161  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  13825067 ccatttatatctacgcaccaagtccaataatgttgggtgt 13825106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 34250399 - 34250342
Alignment:
Q  27 gacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaa 84  Q
    |||| |||||| |||| ||| | |||||||||||||| ||||||||||||||||||||    
T  34250399 gacaaccctcaccttacaagtcggttttgtaaggatgagttaggcccaatataaaaaa 34250342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 45941175 - 45941136
Alignment:
Q  237 ccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  45941175 ccctcaccttacaagctggttttgtaaggatgagttagac 45941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 5440680 - 5440718
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggataaattagac 276  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  5440680 cctcaccttacaagctggttttgtaaggatgagttagac 5440718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 40337918 - 40337868
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| |||||  ||||||||||||| ||||||||||||||||||    
T  40337918 ccctcaccttacaagccgattttgtaaggatgagttaggcccaatataaaa 40337868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 13769332 - 13769303
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  13769332 cctcaccttacaagctggttttgtaaggat 13769303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 31606488 - 31606532
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||    
T  31606488 ggcatccctcaccttacaagctggttttgttaggatgagttagac 31606532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 50057088 - 50057132
Alignment:
Q  29 cacccctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||||||| |||| ||||| |||||||||||||| |||||||||    
T  50057088 cacccctcaccttacaagccagttttgtaaggatgagttaggccc 50057132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 51917942 - 51917990
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataa 80  Q
    |||||| |||| ||||| |||||||||||||| ||| ||||||||||||    
T  51917942 ccctcagcttacaagccagttttgtaaggatgagttgggcccaatataa 51917990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 31789400 - 31789462
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||| |||| |||| |||| ||||| ||||||||||||||  ||||||||||||||||||    
T  31789400 aagagtggcacctctcaccttacaagccggttttgtaaggatgaattaggcccaatataaaaa 31789462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 32752419 - 32752356
Alignment:
Q  29 cacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaaacataatatg 93  Q
    ||||||||| |||||||||| |||||||||||||| ||||| |||| ||| | ||||||||||||    
T  32752419 cacccctcaccttataagccggttttgtaaggatgagttagacccattat-acaaacataatatg 32752356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 32752441 - 32752377
Alignment:
Q  215 gaaatgagtttataaa---tggcaaccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    ||||||||||||||||   ||||| ||||||||||| |||| |||||||||||||| | ||||||    
T  32752441 gaaatgagtttataaagggtggcacccctcaccttataagccggttttgtaaggatgagttagac 32752377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 1289701 - 1289640
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||| ||||||||| |||| ||||| |||||||| ||||| ||||  ||||||||||||    
T  1289701 aagagtggcacccctcaccttacaagccggttttgtacggatgagttaaacccaatataaaa 1289640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 7525044 - 7525077
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaagg 265  Q
    |||| |||||||||||||||||||||||||||||    
T  7525044 ggcagccctcaccttacaagctggttttgtaagg 7525077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 17557770 - 17557737
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaagg 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  17557770 ggcaaccctcaccttacaagctgattttgtaagg 17557737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 33879819 - 33879790
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  33879819 cctcaccttacaagctggttttgtaaggat 33879790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 33964436 - 33964465
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  33964436 cctcaccttacaagctggttttgtaaggat 33964465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 35926289 - 35926260
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  35926289 cctcaccttacaagctggttttgtaaggat 35926260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 36326969 - 36327002
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggataaat 271  Q
    ||||||||||||||| ||||||||||||||||||    
T  36326969 cctcaccttacaagccggttttgtaaggataaat 36327002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 45403503 - 45403532
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  45403503 cctcaccttacaagctggttttgtaaggat 45403532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 369657 - 369701
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  369657 ggcaatcctcaccttacaagatggttttgtaaggatgagttagac 369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 33248373 - 33248345
Alignment:
Q  231 tggcaaccctcaccttacaagctggtttt 259  Q
    |||||||||||||||||||||||||||||    
T  33248373 tggcaaccctcaccttacaagctggtttt 33248345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 33268545 - 33268517
Alignment:
Q  231 tggcaaccctcaccttacaagctggtttt 259  Q
    |||||||||||||||||||||||||||||    
T  33268545 tggcaaccctcaccttacaagctggtttt 33268517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 43361599 - 43361555
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    ||||| ||||||||||||||| |||||||||||||| | ||||||    
T  43361599 ggcaatcctcaccttacaagccggttttgtaaggatgagttagac 43361555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 43938947 - 43938911
Alignment:
Q  240 tcaccttacaagctggttttgtaaggataaattagac 276  Q
    |||||||||||||||||||||||||||| | ||||||    
T  43938947 tcaccttacaagctggttttgtaaggatgagttagac 43938911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 52923813 - 52923734
Alignment:
Q  186 aagtcccacataggataaagatgaagttagaaatgagtttataaa--tggcaaccctcaccttacaagctggttttgtaa 263  Q
    ||||||||||||||||  |||| | |   ||||||||||||||||  || || ||||||||||||||| |||||||||||    
T  52923813 aagtcccacataggatggagataacgaatgaaatgagtttataaaagtgacacccctcaccttacaagttggttttgtaa 52923734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 21374291 - 21374332
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaatta 273  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  21374291 ggcaaccttcaccttacaagctggttttgtaaggatgaatta 21374332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 9889349 - 9889310
Alignment:
Q  44 aagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  9889349 aagccggttttgtaaggatgagttaggcccaatataaaaa 9889310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 29684068 - 29684111
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattaga 275  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||    
T  29684068 ggcaatcctcaccttacaagccggttttgtaaggataagttaga 29684111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 36901204 - 36901255
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||| |||| |||||  ||||||||||||| |||||||||||||||||||    
T  36901204 ccctcaccttacaagccatttttgtaaggatgagttaggcccaatataaaaa 36901255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 36901438 - 36901489
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    |||||| |||| |||||  ||||||||||||| |||||||||||||||||||    
T  36901438 ccctcaccttacaagccatttttgtaaggatgagttaggcccaatataaaaa 36901489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 7748149 - 7748199
Alignment:
Q  123 catttatatctacgcaccaaatccaataatgttgggtgtgaggggtgtatt 173  Q
    |||||||||||| |||||||||||||||||| ||||  |||||| ||||||    
T  7748149 catttatatctatgcaccaaatccaataatgatgggcatgagggatgtatt 7748199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 11967189 - 11967137
Alignment:
Q  215 gaaatgagtttataaa---tggcaaccctcaccttacaagctggttttgtaag 264  Q
    ||||||||||||||||   ||||| || |||||||||||||||||||||||||    
T  11967189 gaaatgagtttataaaaagtggcacccgtcaccttacaagctggttttgtaag 11967137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 26760872 - 26760818
Alignment:
Q  29 cacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 83  Q
    ||||||||| |||| ||||| || ||||||||||| ||||| |||||||||||||    
T  26760872 cacccctcaccttacaagccggtattgtaaggatgagttagacccaatataaaaa 26760818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 15061306 - 15061277
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||||||||||||||    
T  15061306 cctcaccttacaagctggttttgtaaggat 15061277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 25621330 - 25621297
Alignment:
Q  234 caaccctcaccttacaagctggttttgtaaggat 267  Q
    ||||||||||||||||||| ||||||||||||||    
T  25621330 caaccctcaccttacaagccggttttgtaaggat 25621297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 7877907 - 7877943
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggataaattag 274  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  7877907 cctcaccttacaagccggttttgtaaggatgaattag 7877943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 30156271 - 30156307
Alignment:
Q  238 cctcaccttacaagctggttttgtaaggataaattag 274  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  30156271 cctcaccttacaagccggttttgtaaggataagttag 30156307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 40010037 - 40010077
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||| |||| ||||| ||||||||||||||||||||||||    
T  40010037 cctcaccttacaagccggttttgtaaggatgtgttaggccc 40010077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 20597 - 20632
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggat 267  Q
    ||||| ||||||||||||||||||||||||||||||    
T  20597 ggcaatcctcaccttacaagctggttttgtaaggat 20632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 15286912 - 15286955
Alignment:
Q  233 gcaaccctcaccttacaagctggttttgtaaggataaattagac 276  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||    
T  15286912 gcaatcctcactttacaagctggttttgtaaggatgaattagac 15286955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 37781891 - 37781856
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggat 267  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37781891 ggcaatcctcaccttacaagctggttttgtaaggat 37781856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 904795 - 904745
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| ||||| |||||||||||||| || |||||||||||||||    
T  904795 ccctcaccttacaagccggttttgtaaggatgagtcaggcccaatataaaa 904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 4796420 - 4796470
Alignment:
Q  32 ccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    |||||| |||| ||||  |||||||||||||| ||||||||||||||||||    
T  4796420 ccctcaccttacaagcgggttttgtaaggatgagttaggcccaatataaaa 4796470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 28156087 - 28156129
Alignment:
Q  232 ggcaaccctcaccttacaagctggttttgtaaggataaattag 274  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||    
T  28156087 ggcaatcctcaccttacaagccggttttgtaaggatgaattag 28156129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 2716609 - 2716649
Alignment:
Q  33 cctcatcttataagcccgttttgtaaggatgtgttaggccc 73  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  2716609 cctcaccttataagccggttttgtaaggatgagttaggccc 2716649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 2722009 - 2722045
Alignment:
Q  231 tggcaaccctcaccttacaagctggttttgtaaggat 267  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  2722009 tggcacccctcaccatacaagctggttttgtaaggat 2722045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 31974358 - 31974406
Alignment:
Q  122 ccatttatatctacgcaccaaatccaataatgttgggtgtgaggggtgt 170  Q
    ||||||||||| || ||||||  |||||| |||||||||||||||||||    
T  31974358 ccatttatatccacacaccaagcccaatagtgttgggtgtgaggggtgt 31974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 16106 - 16045
Alignment:
Q  21 aagagtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaa 82  Q
    ||||||| ||||||||| |||| ||||| |||||||| ||||| ||||  ||||||||||||    
T  16106 aagagtggcacccctcaccttacaagccggttttgtacggatgagttaaacccaatataaaa 16045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University