View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13894_high_5 (Length: 312)
Name: NF13894_high_5
Description: NF13894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13894_high_5 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 51047663 - 51047418
Alignment:
| Q |
17 |
aaaattgaaaaaacggcacataacaa-gtggttgttcagcattgtggcacaagagaaacaa-gatggnnnnnnnnnnnncatgaataaataggacaagaa |
114 |
Q |
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| T |
51047663 |
aaaattgaaaaaacagcacataacaaagtggttgttcagcatggtggcacaagagcaacaaagatgggaaaaaaaaaa-catgaataaataggacaagaa |
51047565 |
T |
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| Q |
115 |
caagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggcccacgttttaata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||| |
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| T |
51047564 |
caagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagcggggcccgcatttttata |
51047465 |
T |
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| Q |
215 |
atctctctccacagattctttgcaaaccaaacgagagaaattagcta |
261 |
Q |
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| T |
51047464 |
atctctctccacagattctttgcaaaccaaacgagagaaattagcta |
51047418 |
T |
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Target: scaffold0031 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 106848 - 106956
Alignment:
| Q |
94 |
catgaataaataggacaagaacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggc |
193 |
Q |
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||||||||||| ||||||||||||||||||| || ||||| |||||||| || |||||||||||||||||||||| ||||||||| ||||| |||| || |
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| T |
106848 |
catgaataaattggacaagaacaagggtaatttaagaaacagaagagcaaagcgagtttcttctgtctttcttcggatatcagcgtggagaccaaaaagc |
106947 |
T |
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| Q |
194 |
agtggggcc |
202 |
Q |
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| T |
106948 |
agtggggcc |
106956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 10365633 - 10365784
Alignment:
| Q |
102 |
aataggacaagaacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggc |
201 |
Q |
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||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |||||||||| ||||| || || || | ||||| || |||||| |
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| T |
10365633 |
aataggacaggaacaagggtaatataggaaacatagtagcaaagtgagtttcttcggtctttcttcccatatgagggaagaaacaaaaaagctatggggc |
10365732 |
T |
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| Q |
202 |
ccacgttttaataatctctctccacagattctttgcaaaccaaacgagagaa |
253 |
Q |
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| T |
10365733 |
ccgcatttttataatctctctctgcaagttctttgcaaaccaaacgagagaa |
10365784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 39121821 - 39121919
Alignment:
| Q |
105 |
aggacaagaacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggccc |
203 |
Q |
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| T |
39121821 |
aggacaagaacaagggtaatataggaaacataatagcaaagtgagtttcttcagtctttcttcccatatgagggaagaaacaaaaaagcagtggggccc |
39121919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 1776130 - 1776243
Alignment:
| Q |
17 |
aaaattgaaaaaacggcacataacaa-gtggttgttcagcattgtggcacaagagaaacaagatggnnnnnnnnnnnn--catgaataaataggacaaga |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |
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| T |
1776130 |
aaaattgaaaaaacggcacataacaaagtggttgttcagcatggtggcacaagagggccaagatggaaagaaaaaaaaaacatgaataaataggacaaga |
1776229 |
T |
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| Q |
114 |
acaagggtaatata |
127 |
Q |
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| T |
1776230 |
acaagggtaatata |
1776243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 38783078 - 38782966
Alignment:
| Q |
113 |
aacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggcccacgttttaa |
212 |
Q |
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||||||||||||||||||||| | | ||||||| |||||| ||||||||| || ||||||||||| | |||| ||| |||| |||||||||| | |
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| T |
38783078 |
aacaagggtaatataggaaacacataaccagagtggatttcttagctctttcttctcacatcagcgaggaaacaaaatagcaatgggccccacgttttta |
38782979 |
T |
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| Q |
213 |
taatctctctcca |
225 |
Q |
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| T |
38782978 |
tgatctctctcca |
38782966 |
T |
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