View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13894_low_1 (Length: 488)
Name: NF13894_low_1
Description: NF13894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13894_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 176 - 471
Target Start/End: Complemental strand, 52396760 - 52396450
Alignment:
| Q |
176 |
atcaattatcatctataaatagataccagatagaacgtgcaacactttc-----------acattcattgctaagtacaaacacactca----accggca |
260 |
Q |
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| T |
52396760 |
atcaattatcatctataaatagataccagatagaacgtgcaacactttcttcccccaaagacattcattgctaagtaaagacacactcactcaagcggca |
52396661 |
T |
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| Q |
261 |
aaacagagtaacgccgaataacccaataaacaaagaaataaaatggcggtagcacacggtggttacgacggtgaaatcggtggctacaattctcgtctaa |
360 |
Q |
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| T |
52396660 |
aaacagagtaacgccgaataacccaataaacaaagaaataaaatggcggtagcacacggtggttacgacggtgaaatcggtggctacaattctcgtctaa |
52396561 |
T |
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| Q |
361 |
tcccatcaataaaaccagagttattcaatgacagtgcaaattccagctcttacacctacgacgacgtttcaaccgaaagaaaagaatcagtacttaccga |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52396560 |
tcccatcaataaaaccagagttattcaatgacagtgcaaattccagctcttacacctacgacgacgtttcaaccgaaagaaaagaatcagtactaaccga |
52396461 |
T |
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| Q |
461 |
agaagaagaag |
471 |
Q |
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||||||||||| |
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| T |
52396460 |
agaagaagaag |
52396450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52396999 - 52396927
Alignment:
| Q |
1 |
cgtggctatcggtcttattttaccaaaaatggaccggtgcaaagatacatatacactgttctcacctgcttcg |
73 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52396999 |
cgtggctattggtcttattttaccaaaaatggaccggtgcaaagatacacatacactgttctcacctgcttcg |
52396927 |
T |
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