View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13894_low_3 (Length: 366)
Name: NF13894_low_3
Description: NF13894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13894_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 18220137 - 18220486
Alignment:
| Q |
1 |
gctccctcatttctctgtttgcagttcaagaaaagtaagcaataactcaatcaatagaataaccaataacactggtcattcgatcatnnnnnnnnnnnnn |
100 |
Q |
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| T |
18220137 |
gctccctcatttctctgtttgcagatcaagaaaagtaagcaataactcaatcaatagaataaccaataacactggccattcaatcataaaaataaaataa |
18220236 |
T |
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| Q |
101 |
nnnntgaaattggcaataccttttcaacttaattatttcctcctttatctctctgagttcatgactcgtaacattttctggtgaaatgctgtcaccaggc |
200 |
Q |
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| T |
18220237 |
aaaatgaaattggcaataccttttcaacttaattatttcctcctttatctctctgagttcatgactagtaacattttctggtgaaatgctgtcaccaggc |
18220336 |
T |
|
| Q |
201 |
ttccaaccagggggaggagtccagtaaggatcttgaacacccaattcctttctaatatcagcaagatcagcactctctaaccagtattccattgaacctt |
300 |
Q |
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| T |
18220337 |
ttccaaccagggggaggagtccagtaaggatcttgaacacccaattcctttctaatatcagcaagatcagcactctctaaccagtattccattgaacctt |
18220436 |
T |
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| Q |
301 |
cggcattgtgtttccgtctgaatctttcaactcctcctggtgccactttt |
350 |
Q |
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| T |
18220437 |
cggcattgtgtttccgtctgaatctttcaactcctcctggtgccactttt |
18220486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 43011917 - 43012262
Alignment:
| Q |
1 |
gctccctcatttctctgtttgcagttcaagaaaagtaagcaataactcaa--tcaatagaataaccaataacactggtcattcgatcatnnnnnnnnnnn |
98 |
Q |
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||||||||||||| |||||||||| |||||||||||| | |||| |||| |||||||||||||||||||||| ||||||| ||||| |
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| T |
43011917 |
gctccctcatttcactgtttgcagatcaagaaaagtatgtgataaatcaaaatcaatagaataaccaataacaccagtcattcaatcataaaatggaaaa |
43012016 |
T |
|
| Q |
99 |
nnnnnntgaaattggcaataccttttcaacttaattatttcctcctttat---ctctctgagttcatgactcgtaacattttctggtgaaatgctgtcac |
195 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||| | |
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| T |
43012017 |
------tgaaactggcaataccgtttcaacttaattatttcctcctttatgatctctctgagttcattactagtaacatattctggtgcaatgctgtctc |
43012110 |
T |
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| Q |
196 |
caggcttccaaccagggggaggagtccagtaaggatcttgaacacccaattcctttctaatatcagcaagatcagcactctctaaccagtattccattga |
295 |
Q |
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|||||||||| |||||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43012111 |
caggcttccagccagggggaggagtccagtaggggtcttga---cccaattcctttctaagatcagcaagatcagcactctctaaccagtattccattga |
43012207 |
T |
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| Q |
296 |
accttcggcattgtgtttccgtctgaatctttcaactcctcctggtgccactttt |
350 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43012208 |
accttcggcattgtgtttccgtctgaatctatcaactcctcctggtgccactttt |
43012262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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