View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13894_low_4 (Length: 320)

Name: NF13894_low_4
Description: NF13894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13894_low_4
NF13894_low_4
[»] chr4 (22 HSPs)
chr4 (1-312)||(50249645-50249955)
chr4 (4-176)||(37826021-37826191)
chr4 (145-214)||(48734359-48734428)
chr4 (10-100)||(48146945-48147034)
chr4 (10-100)||(48170195-48170284)
chr4 (146-214)||(48865055-48865121)
chr4 (35-101)||(7793664-7793730)
chr4 (108-166)||(7801490-7801548)
chr4 (4-98)||(48155593-48155686)
chr4 (145-214)||(48853665-48853735)
chr4 (12-99)||(45371174-45371260)
chr4 (61-175)||(50669901-50670013)
chr4 (39-101)||(7816825-7816887)
chr4 (145-219)||(45370972-45371046)
chr4 (10-142)||(7766475-7766602)
chr4 (10-101)||(7790915-7791007)
chr4 (75-146)||(7772880-7772946)
chr4 (10-53)||(48864853-48864896)
chr4 (108-162)||(7814330-7814384)
chr4 (108-162)||(7823822-7823876)
chr4 (180-214)||(50681946-50681980)
chr4 (173-214)||(7879391-7879432)
[»] chr7 (1 HSPs)
chr7 (144-214)||(48884917-48884987)
[»] chr1 (2 HSPs)
chr1 (4-49)||(24367928-24367973)
chr1 (10-50)||(24323777-24323817)
[»] chr8 (2 HSPs)
chr8 (10-43)||(12201168-12201201)
chr8 (10-43)||(12445596-12445629)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 50249955 - 50249645
Alignment:
Q  1 atcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50249955 atcgacagttttgtttgtgcgattcactgttatttatgcatttgtaactggatagagttctaaatatatgttgttgtcactgtctgaaattgttttatat 50249856  T
Q  101 gataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttcagcggactctatt-aactttggcccttgccattta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  50249855 gataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttcagtggactctattaaactttggcccttgccattta 50249756  T
Q  200 tctgtttcaaaccagaaaagnnnnnnnnctaatttcaaaattattcagttctgctctctatgttctttactctctttatattcagtctagataggatttc 299  Q
    ||||||||||||||| |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249755 tctgtttcaaaccaggaaa--aaaaaaactaatttcaaaattattcagttctgctctctatgttctttactctctttatattcagtctagataggatttc 50249658  T
Q  300 ttttcagaattat 312  Q
    |||||||||||||    
T  50249657 ttttcagaattat 50249645  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 37826191 - 37826021
Alignment:
Q  4 gacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatgat 103  Q
    |||||||||| || || | |||| |||||||||||||| ||||| ||||| ||||| ||| | |||||| ||||||||||||||||| ||||||||||      
T  37826191 gacagttttgattatgtgtttcattgttatttatgcatatgtaattggattgagttctaattgtatgtttttgtcactgtctgaaatggttttatatg-- 37826094  T
Q  104 aaaataaattaatctgatgagtttatgcatattgaaggaaa---aaggttttgttctctaatttcagcggactcta 176  Q
        ||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||| ||||||||    
T  37826093 ---gtaaattaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatttcagtggactcta 37826021  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 48734428 - 48734359
Alignment:
Q  145 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 214  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  48734428 aaggttttcttctctaattttagcggactctattaactttagcccttgccatttctctgtttcaaaccag 48734359  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 48147034 - 48146945
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatat 100  Q
    |||||||| | |||||| |||||||||||||||||||||||||| ||||| | ||| |||||||| ||||||| ||||||||||| |||||    
T  48147034 tttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttct-aatgtatgttgtggtcactgcctgaaattgttctatat 48146945  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 48170284 - 48170195
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||  | ||| |||||||| |||||||   |||||||| ||||||    
T  48170284 tttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtgct-aatgtatgttgtggtcactgctagaaattgtattatat 48170195  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 48865055 - 48865121
Alignment:
Q  146 aggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 214  Q
    ||||||||||||||||||||||||||||| |||| || ||||| ||||||||  |||||||||||||||    
T  48865055 aggttttgttctctaatttcagcggactccattatctatggccattgccatt--tctgtttcaaaccag 48865121  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 7793730 - 7793664
Alignment:
Q  35 tatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 101  Q
    ||||||||||||||||||| || || |||||  |||||||||||||||  |||||||||||||||||    
T  7793730 tatgcatgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttatatg 7793664  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 7801490 - 7801548
Alignment:
Q  108 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttca 166  Q
    |||| |||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  7801490 taaaataatctaattagtttatgcatgttgaaggagaaaggttttgttctctaatttca 7801548  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 48155686 - 48155593
Alignment:
Q  4 gacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttat 98  Q
    ||||| |||||||||| ||||||||| ||||||| ||||||| ||||||| ||||| ||| | |||||||| |||| ||  ||||||||||||||    
T  48155686 gacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagttctaa-tgtatgttgtggtcattgcttgaaattgttttat 48155593  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 48853665 - 48853735
Alignment:
Q  145 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctg-tttcaaaccag 214  Q
    |||||||||||||||||||| || |||  ||||||| ||||||||||||||||| |||| |||||||||||    
T  48853665 aaggttttgttctctaattttagtggaaactattaagtttggcccttgccatttctctgttttcaaaccag 48853735  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 45371260 - 45371174
Alignment:
Q  12 tgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttata 99  Q
    |||||||| |||||||| |||||||||||||||||  ||||| ||||| | ||| ||||||||  |||||||  ||||||||||||||    
T  45371260 tgtttgtgtgattcacttttatttatgcatgtgtagttggattgagttct-aatgtatgttgtgatcactgttagaaattgttttata 45371174  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 50669901 - 50670013
Alignment:
Q  61 taaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaag---gttttgttct 157  Q
    ||||| ||||||||||| ||||  ||||||||||||||||| |||| |||     |||| | | ||||||||| |||||||||||||   ||||||||||    
T  50669901 taaatgtatgttgttgtgactgcttgaaattgttttatatggtaaactaa-----tctggttaatttatgcatgttgaaggaaaaagaaggttttgttct 50669995  T
Q  158 ctaatttcagcggactct 175  Q
    ||||||| || |||||||    
T  50669996 ctaattttagtggactct 50670013  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 7816887 - 7816825
Alignment:
Q  39 catgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 101  Q
    ||||||||||||||| || || |||||  |||||||||||||||  |||||||||||||||||    
T  7816887 catgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttatatg 7816825  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 45371046 - 45370972
Alignment:
Q  145 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccagaaaag 219  Q
    ||||||||||||||||| || || ||||||||||||||||  |||||||||| | ||  ||||||||||| ||||    
T  45371046 aaggttttgttctctaaatttagtggactctattaactttatcccttgccatctctcaatttcaaaccaggaaag 45370972  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 7766475 - 7766602
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatgataaaata 109  Q
    |||||||||  | |||| |||| ||||||||||||||||||||| |  || ||||| |||||| ||||||||   ||||||||||| || ||      ||    
T  7766475 tttgtttgtatgcttcaatgttgtttatgcatgtgtaactggattgcattctaaatttatgttattgtcactacttgaaattgtttcatgtg-----gta 7766569  T
Q  110 aattaatctgatgagtttatgcatattgaagga 142  Q
    |||||||||  ||||||||||||| ||||||||    
T  7766570 aattaatcttttgagtttatgcatgttgaagga 7766602  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 7790915 - 7791007
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgtgtaactgga-tagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 101  Q
    |||||||||| || |||||||||||||||||| |||||||||| | | ||| ||||| |||| || ||||| ||  |||||||| ||||||||    
T  7790915 tttgtttgtgtgactcactgttatttatgcatctgtaactggatttgcgttttaaatgtatgctgatgtcattgcttgaaattgatttatatg 7791007  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 7772946 - 7772880
Alignment:
Q  75 tgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaa 146  Q
    ||||||||  |||||||||||||||||      |||||||||||||||||||||| ||| ||||||||||||    
T  7772946 tgtcactgcttgaaattgttttatatg-----gtaaattaatctgatgagtttatacatgttgaaggaaaaa 7772880  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 48864853 - 48864896
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgtgtaactggat 53  Q
    |||||||||| || ||| ||||||||||||||||||||||||||    
T  48864853 tttgtttgtgtgaatcattgttatttatgcatgtgtaactggat 48864896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 7814330 - 7814384
Alignment:
Q  108 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 162  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7814330 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7814384  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 7823822 - 7823876
Alignment:
Q  108 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 162  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7823822 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7823876  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 50681946 - 50681980
Alignment:
Q  180 actttggcccttgccatttatctgtttcaaaccag 214  Q
    ||||||||||||||||||| |||||||||||||||    
T  50681946 actttggcccttgccatttctctgtttcaaaccag 50681980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 7879391 - 7879432
Alignment:
Q  173 tctattaactttggcccttgccatttatctgtttcaaaccag 214  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  7879391 tctactaactttggcccttgtcatttctctgtttcaaaccag 7879432  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 48884917 - 48884987
Alignment:
Q  144 aaaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 214  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||||| |||||   |||||||||||||    
T  48884917 aaaggctttgttctctaatttcaatggactctattaactctggcccttgtcatttcattgtttcaaaccag 48884987  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 24367928 - 24367973
Alignment:
Q  4 gacagttttgtttgtgcgattcactgttatttatgcatgtgtaact 49  Q
    ||||| |||||||| |||||||||| ||||||||||||||||||||    
T  24367928 gacagctttgtttgggcgattcactattatttatgcatgtgtaact 24367973  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 24323777 - 24323817
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgtgtaactg 50  Q
    |||||||||||||||| | ||||||||||||| ||||||||    
T  24323777 tttgtttgtgcgattcgcggttatttatgcatatgtaactg 24323817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 12201168 - 12201201
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgt 43  Q
    |||||||||| |||||||||||||||||||||||    
T  12201168 tttgtttgtgtgattcactgttatttatgcatgt 12201201  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 12445596 - 12445629
Alignment:
Q  10 tttgtttgtgcgattcactgttatttatgcatgt 43  Q
    |||||||||| |||||||||||||||||||||||    
T  12445596 tttgtttgtgtgattcactgttatttatgcatgt 12445629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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