View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13894_low_5 (Length: 315)
Name: NF13894_low_5
Description: NF13894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13894_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 41779337 - 41779036
Alignment:
| Q |
1 |
atctcatctgaatcatattaagtgttagctagactcgtatacatacatcattgaatttctttagacatattaaatgtaaatctaaagaatttatttgata |
100 |
Q |
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| T |
41779337 |
atctcatctgaatcatatttagtgttagctagactcgtatacatacatcattgaatttctttagacatattaaatgtaaatctaaagaatttatttgata |
41779238 |
T |
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| Q |
101 |
aaatttagaaatgattgagctctaacccatgcagcaacgccaaatcgaatttctaatgcatcaaggactttgaagnnnnnnntaataatattgtatagcg |
200 |
Q |
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| T |
41779237 |
aaatttagaattgattgagctctaacccattcagcaacgccaaatcgaatttctaaagcatcaaggactttgaagaagaaaa-aataatattgtacagcg |
41779139 |
T |
|
| Q |
201 |
atattactcatgagatgatatgatgttttagttactttgtttcacgtaaaaatccacttggattgatctagtagtcttaatttgagaccgtggaatgtgt |
300 |
Q |
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| T |
41779138 |
atattactcatgagatgatatgatgttttggttactttgtttcacgtaaaaatccatttggattgatctggtagtcttagtttgagaccgtggagtgtgt |
41779039 |
T |
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| Q |
301 |
ttc |
303 |
Q |
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||| |
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| T |
41779038 |
ttc |
41779036 |
T |
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