View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13894_low_8 (Length: 285)

Name: NF13894_low_8
Description: NF13894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13894_low_8
NF13894_low_8
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-275)||(8200-8474)
[»] chr5 (8 HSPs)
chr5 (114-275)||(27017403-27017564)
chr5 (124-275)||(38707158-38707309)
chr5 (125-241)||(38436647-38436765)
chr5 (122-203)||(10468811-10468892)
chr5 (122-203)||(28639230-28639311)
chr5 (150-203)||(26501444-26501497)
chr5 (151-270)||(33023500-33023619)
chr5 (150-221)||(3417580-3417651)
[»] chr7 (10 HSPs)
chr7 (114-267)||(8606845-8606999)
chr7 (150-221)||(34205943-34206014)
chr7 (151-203)||(21431401-21431453)
chr7 (150-221)||(4163652-4163723)
chr7 (150-221)||(43109360-43109431)
chr7 (122-203)||(32703040-32703121)
chr7 (165-253)||(13773021-13773109)
chr7 (122-221)||(45459017-45459116)
chr7 (124-194)||(48162936-48163006)
chr7 (150-203)||(5651939-5651992)
[»] chr1 (15 HSPs)
chr1 (125-275)||(22560187-22560337)
chr1 (114-269)||(6632615-6632770)
chr1 (114-254)||(39415772-39415912)
chr1 (122-241)||(31458840-31458959)
chr1 (122-203)||(35368405-35368486)
chr1 (114-275)||(50092129-50092290)
chr1 (150-203)||(32641484-32641537)
chr1 (122-203)||(36193272-36193353)
chr1 (134-271)||(39495764-39495901)
chr1 (122-203)||(51128504-51128585)
chr1 (153-203)||(24561548-24561598)
chr1 (150-221)||(10386369-10386440)
chr1 (151-252)||(22816568-22816668)
chr1 (7-79)||(22560383-22560455)
chr1 (151-221)||(6333087-6333157)
[»] chr3 (16 HSPs)
chr3 (125-275)||(37166219-37166369)
chr3 (122-253)||(26376605-26376736)
chr3 (114-274)||(14608827-14608985)
chr3 (122-241)||(15372317-15372436)
chr3 (122-241)||(25617525-25617644)
chr3 (125-275)||(8845574-8845723)
chr3 (122-227)||(53050543-53050648)
chr3 (151-203)||(19653231-19653283)
chr3 (122-241)||(33980603-33980721)
chr3 (122-221)||(40969799-40969898)
chr3 (122-204)||(7922384-7922466)
chr3 (151-203)||(50029063-50029115)
chr3 (150-221)||(19232699-19232770)
chr3 (165-203)||(27874336-27874374)
chr3 (145-191)||(30819245-30819291)
chr3 (150-221)||(16897031-16897103)
[»] chr4 (21 HSPs)
chr4 (151-272)||(21479267-21479388)
chr4 (125-268)||(10462427-10462570)
chr4 (150-269)||(42766209-42766328)
chr4 (122-242)||(32045478-32045598)
chr4 (172-263)||(35376071-35376162)
chr4 (122-203)||(7446345-7446426)
chr4 (122-203)||(10009663-10009744)
chr4 (122-227)||(19836720-19836825)
chr4 (154-266)||(36188698-36188810)
chr4 (125-203)||(25459498-25459576)
chr4 (153-219)||(43470263-43470329)
chr4 (122-203)||(26017669-26017750)
chr4 (124-182)||(8933225-8933283)
chr4 (124-203)||(14528335-14528414)
chr4 (120-203)||(19310061-19310144)
chr4 (150-201)||(38948353-38948404)
chr4 (144-218)||(13840815-13840889)
chr4 (122-192)||(25241947-25242017)
chr4 (145-266)||(18740249-18740370)
chr4 (151-275)||(20248691-20248818)
chr4 (145-197)||(42674941-42674993)
[»] chr8 (6 HSPs)
chr8 (114-270)||(12230323-12230479)
chr8 (151-268)||(15045829-15045946)
chr8 (122-203)||(38891839-38891920)
chr8 (150-221)||(24732753-24732824)
chr8 (150-221)||(41692216-41692287)
chr8 (141-193)||(36568415-36568467)
[»] scaffold0175 (1 HSPs)
scaffold0175 (122-268)||(19646-19792)
[»] chr6 (8 HSPs)
chr6 (122-275)||(19617226-19617379)
chr6 (133-203)||(17714069-17714139)
chr6 (151-203)||(33754645-33754697)
chr6 (150-227)||(26710846-26710923)
chr6 (150-221)||(3490296-3490367)
chr6 (150-221)||(31933863-31933934)
chr6 (122-203)||(24991498-24991578)
chr6 (213-269)||(33666957-33667013)
[»] chr2 (15 HSPs)
chr2 (125-270)||(34358801-34358945)
chr2 (115-215)||(23289919-23290019)
chr2 (144-271)||(17930702-17930829)
chr2 (150-203)||(6469081-6469134)
chr2 (125-221)||(3153694-3153790)
chr2 (125-200)||(39768612-39768687)
chr2 (123-203)||(14163979-14164059)
chr2 (150-221)||(10059955-10060026)
chr2 (127-203)||(536308-536384)
chr2 (150-221)||(79388-79459)
chr2 (124-199)||(16203029-16203104)
chr2 (150-221)||(44939843-44939914)
chr2 (125-203)||(34385389-34385467)
chr2 (226-266)||(18670628-18670668)
chr2 (127-175)||(30255640-30255688)
[»] scaffold0394 (1 HSPs)
scaffold0394 (125-203)||(5261-5339)


Alignment Details
Target: scaffold0217 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8474 - 8200
Alignment:
Q  1 caagtcaaaatgagatatattaacagatgcctctgctttttagcacaagaagtacaaagagaagcagagcagaattacaagaaccagtccttnnnnnnnn 100  Q
    |||| ||||||| |||||||||| | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||            
T  8474 caagccaaaatgtgatatattaaaaaatgcctctgctttctaacataagaagtacaaagagaagcagagcagaattacaagaaccagtccttaaaaatct 8375  T
Q  101 nnnnnnnnnnnnncaacggttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaa 200  Q
                 ||||||| ||||||||||||||||| ||| ||||  ||||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  8374 aaaaagagaaaaacaacggtcagccaatccccaaacaatctaggggtcgctgccaccacatatggtaaccaaaaggaaagcaaacatttttagctttcaa 8275  T
Q  201 ccaggtaagagaagtaatcttgacattttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8274 ccaggtaagagaagtaatcttgaccttttccataagttgcataattgatttaactttattagagaacaacctatg 8200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 114 - 275
Target Start/End: Complemental strand, 27017564 - 27017403
Alignment:
Q  114 caacggttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaa 213  Q
    ||||||| || |||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||| ||||| ||| |||| |||||||||||    
T  27017564 caacggtcagacaatccgcaaacaaactaggggttactgccaccacatatggtaaccaaaaggaaaacaaacatttttaacttgcaactaggtaagagaa 27017465  T
Q  214 gtaatcttgacattttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27017464 gtaatcttgaccttttccataagctgcataattgatttaactttattagagaacaacctatg 27017403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 38707158 - 38707309
Alignment:
Q  124 ccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttga 223  Q
    |||||||||||||||||||  | ||  |||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||| || || |    
T  38707158 ccaatccccaaacaaactagagattgatgccaccacatatgataaccaaaaggaaagcaaacatttctagctttcaaccagataagagaagtgattttca 38707257  T
Q  224 cattttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
    | || |||||||||||||  |  |||||||||||||||||||||||||||||    
T  38707258 ccttctccataagctgcactaccgatttaactttattagagaacaacctatg 38707309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 38436647 - 38436765
Alignment:
Q  125 caatccccaaacaaactaagggttactgccacca--tatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttg 222  Q
    ||||||||||||| || | ||||| |||||||||  ||||||| | |||||||||||||||||| ||||| ||||||||||   |||||| || |||||     
T  38436647 caatccccaaacacacaaggggttgctgccaccacatatatgaaagccaaaaggaaagcaaacatttttaactttcaaccaccgaagagatgtgatctta 38436746  T
Q  223 acattttccataagctgca 241  Q
    || ||||||| ||||||||    
T  38436747 accttttccagaagctgca 38436765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 10468811 - 10468892
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | || |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  10468811 agcctatccctaaacaaacaaggggatgcttccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 10468892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 28639311 - 28639230
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||    
T  28639311 agcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttggctttcaacca 28639230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 26501444 - 26501497
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    ||||||||||| |||||||||||||||| |||| ||| ||||||||||||||||    
T  26501444 ctgccaccataaatgataaccaaaaggagagcacacatttttagctttcaacca 26501497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 33023619 - 33023500
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacc-aggtaagagaagtaatcttg-acattttccataagctgcataattga 248  Q
    |||| ||| |||||||||||||||||||| || ||| |||||||||||| || | |||| || ||||| |||| || |||||||  ||||||||||  ||    
T  33023619 tgccgccacatatgataaccaaaaggaaaacacacatttttagctttcagccaatgtaa-agtagtaa-cttgtactttttccagtagctgcataacaga 33023522  T
Q  249 tttaactttattagagaacaac 270  Q
    |||| |||||||||||||||||    
T  33023521 tttagctttattagagaacaac 33023500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 3417580 - 3417651
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| ||||||||||||||||||||||| ||| |||  |||||||| ||  | ||||| ||||||||    
T  3417580 ctgccaccacatatgataaccaaaaggaaagcacacattttgtgctttcaatcatttgagagatgtaatctt 3417651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 267
Target Start/End: Complemental strand, 8606999 - 8606845
Alignment:
Q  114 caacggttagccaa-tccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagaga 212  Q
    ||||||| |||||| ||||||||||||| | ||||| || |||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  8606999 caacggtcagccaaatccccaaacaaacaaggggttgctcccaccacatatggtaaccaaaaggaaagcaagcatttttagctttcaaccaggtaagaga 8606900  T
Q  213 agtaatcttgacattttccataagctgcataattgatttaactttattagagaac 267  Q
    |||||| || || ||||||| ||||| |||||  |||||||||||||||||||||    
T  8606899 agtaatttttaccttttccacaagctacataaccgatttaactttattagagaac 8606845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 34205943 - 34206014
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  34205943 ctgccaccataaatgataaccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 34206014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 21431453 - 21431401
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||| |||||||||||||| |||||| ||| ||||||||||||||||    
T  21431453 tgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 21431401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 4163652 - 4163723
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||| ||||| ||||||||||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  4163652 ctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 4163723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 43109431 - 43109360
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||| ||||| ||||||||||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  43109431 ctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 43109360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 32703040 - 32703121
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| || ||||||||||| |||||| ||  ||||||||||||||||    
T  32703040 agcctatccctaaacaaacaaggggatgctgccaccataaattataaccaaaagaaaagcacacttttttagctttcaacca 32703121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 13773109 - 13773021
Alignment:
Q  165 ataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataattgatttaa 253  Q
    |||||||||||||||||||||| | |||||||||| |||| ||||| |  | || || || |||| || |||||||||||| |||||||    
T  13773109 ataaccaaaaggaaagcaaacattcttagctttcagccagttaagaaatatgattttaacctttttcaaaagctgcataatagatttaa 13773021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 45459017 - 45459116
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||||||||||| | |||||    || ||| | |||||||||||||| |||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  45459017 agccaatccccaaacaagcaaagggacgttgtcactacatatgataaccaaatggaaagcacacattttttgctttcaaccacttgagagatgtaatctt 45459116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 48163006 - 48162936
Alignment:
Q  124 ccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagc 194  Q
    |||| ||||||||||||||  |||| ||||||| | ||||| |||||||||| ||| |||||| |||||||    
T  48163006 ccaaaccccaaacaaactagaggttgctgccactacatatggtaaccaaaagaaaaacaaacatttttagc 48162936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 5651992 - 5651939
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    ||||||||| | |||||||||||||| ||| || ||| ||||||||||||||||    
T  5651992 ctgccaccacaaatgataaccaaaagaaaaacacacatttttagctttcaacca 5651939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 22560337 - 22560187
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgac 224  Q
    |||||||||||||| | | ||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || || ||    
T  22560337 caatccccaaacaagcaaggggttgctgccaccgtaaatgataaccaaaaggaaagcaaacatttttagctttcaactaggtaagagaagtgatttttac 22560238  T
Q  225 attttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
     |||||||||||||||| ||  ||||| |||||||| ||||||||| ||||    
T  22560237 cttttccataagctgcaaaaccgattttactttattggagaacaacatatg 22560187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 6632615 - 6632770
Alignment:
Q  114 caacggttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaa 213  Q
    ||||||| | ||||||| ||||||||| | ||||||||||||||| ||||| |||||| ||||||| || | | |||||| |||||||||| |||| |||    
T  6632615 caacggtcaaccaatcctcaaacaaacaaggggttactgccaccacatatggtaaccagaaggaaatcatatatttttagatttcaaccagctaagtgaa 6632714  T
Q  214 gtaatcttgacattttccataagctgcataattgatttaactttattagagaacaa 269  Q
    || || || || |||| ||||||||||||||   | ||| ||||||||||||||||    
T  6632715 gtgatttttacctttttcataagctgcataaccaaattagctttattagagaacaa 6632770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 39415772 - 39415912
Alignment:
Q  114 caacggttagccaatccccaaacaaactaaggg-ttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagaga 212  Q
    ||||||| ||||||| |||||||||| |||||| |||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||   ||| |     
T  39415772 caacggtcagccaatacccaaacaaa-taagggattactgccaccacatatggtaaccaaagggaaagcaaacatttttagctttcaaccattcaagtgt 39415870  T
Q  213 agtaatcttgacattttccataagctgcataattgatttaac 254  Q
    ||| || || || |||||||| || ||||||| |||||||||    
T  39415871 agtgatttttaccttttccatcagttgcataactgatttaac 39415912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 31458840 - 31458959
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    |||| ||||| |||||||| | ||| | ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||   |||||||   |||||    
T  31458840 agcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaaccaacgaagagaatacatctt 31458939  T
Q  222 gacattttccataagctgca 241  Q
     || ||||||| ||||||||    
T  31458940 aaccttttccaaaagctgca 31458959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 35368486 - 35368405
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  35368486 agcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 35368405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 275
Target Start/End: Original strand, 50092129 - 50092290
Alignment:
Q  114 caacggttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaa 213  Q
    ||||||| ||||||||||||| ||||| | |||||  |||||||| ||||| ||| |||| |||||||  |   |||||||||||||||| |  | ||||    
T  50092129 caacggtcagccaatccccaagcaaacaaggggttgttgccaccacatatggtaatcaaatggaaagctcatgtttttagctttcaaccacgctaaagaa 50092228  T
Q  214 gtaatcttgacattttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
    ||  | || || ||||||||||| |||||   ||||||||| ||||||||||||||||||||    
T  50092229 gtggtttttaccttttccataagttgcatgtctgatttaacattattagagaacaacctatg 50092290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 32641484 - 32641537
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  32641484 ctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 32641537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 36193353 - 36193272
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||    
T  36193353 agcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaacca 36193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 39495764 - 39495901
Alignment:
Q  134 aacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccat 233  Q
    ||||||| | |||||  |||||||||| ||| ||||||||| ||||| | ||| ||||||||||||||||   ||| | ||| || || || |||| |||    
T  39495764 aacaaacaaggggttgttgccaccataaatggtaaccaaaatgaaagaatacatttttagctttcaaccataaaagtgtagtgatttttacctttttcat 39495863  T
Q  234 aagctgcataattgatttaactttattagagaacaacc 271  Q
     || ||||||||||||||||| |||||||| |||||||    
T  39495864 cagttgcataattgatttaacattattagaaaacaacc 39495901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 51128504 - 51128585
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| ||||| | ||||||||||| |||||||||||||| |||||| ||| |||||| |||||||||    
T  51128504 agcctatccctaaacaaacaaagggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagttttcaacca 51128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 24561598 - 24561548
Alignment:
Q  153 ccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  24561598 ccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 24561548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 10386440 - 10386369
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||| ||||| ||||||||||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  10386440 ctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 10386369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 22816568 - 22816668
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataattgatt 250  Q
    |||||||| ||||||||||||||||||||  | ||| |||||||||||| ||| |   |||||||||| ||||  | ||||| |||||||||||||| ||    
T  22816568 tgccaccacatatgataaccaaaaggaaaatatacatttttagctttcagccatg-ctgagaagtaattttgatttcttccagaagctgcataattgttt 22816666  T
Q  251 ta 252  Q
    ||    
T  22816667 ta 22816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 22560455 - 22560383
Alignment:
Q  7 aaaatgagatatattaacagatgcctctgctttttagcacaagaagtacaaagagaagcagagcagaattaca 79  Q
    |||||| |||||||||||| ||| ||||||||  ||||||||| |||||||| ||||||| || | |||||||    
T  22560455 aaaatgtgatatattaacaaatgactctgcttcctagcacaaggagtacaaaaagaagcaaaggaaaattaca 22560383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 6333157 - 6333087
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    |||||||| ||||| ||||||||||||||||| ||| ||||  ||||||||||  |||||||  |||||||    
T  6333157 tgccaccacatatggtaaccaaaaggaaagcacacatttttttctttcaaccatttaagagatataatctt 6333087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 37166369 - 37166219
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgac 224  Q
    |||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||| || ||  |||||| ||||||||| || || ||||| || || ||    
T  37166369 caatccccaaacaaacaaggggttgctgccaccacatatggtaaccaaaaggaaaacacacgtttttagttttcaaccacgttagtgaagtgatttttac 37166270  T
Q  225 attttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
     ||||||||||| ||||| || |||||||| ||||||||||||||||||||    
T  37166269 cttttccataagttgcatgatagatttaacattattagagaacaacctatg 37166219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 253
Target Start/End: Complemental strand, 26376736 - 26376605
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||||||||||||| | |||||  |||||||| ||||| ||||||||||||||||||||| | |||||||||||||| | ||||||||| |  ||    
T  26376736 agccaatccccaaacaaacaaggggttgttgccaccacatatggtaaccaaaaggaaagcaaacattcttagctttcaaccaagcaagagaagtgacttt 26376637  T
Q  222 gacattttccataagctgcataattgatttaa 253  Q
     || || |||| ||||||  ||||||||||||    
T  26376636 taccttctccaaaagctgtgtaattgatttaa 26376605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 274
Target Start/End: Complemental strand, 14608985 - 14608827
Alignment:
Q  114 caacggttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaa 213  Q
    ||||||| |||||||||| |||||||| | |||||  |||||||| ||||| |||||||| ||||||| | || |||||||||||||||| |  ||||||    
T  14608985 caacggtcagccaatccc-aaacaaacaaggggttgttgccaccacatatggtaaccaaatggaaagcta-catttttagctttcaaccacgctagagaa 14608888  T
Q  214 gtaatcttgacattttccataagctgcataattgatttaactttattagagaacaacctat 274  Q
    ||    || || ||||||||||| ||||| ||||||||||| ||| |||||||||||||||    
T  14608887 gtggattttaccttttccataagttgcatgattgatttaacattagtagagaacaacctat 14608827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 15372436 - 15372317
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    |||| ||||| |||||||| ||||| | ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||   |||||||   |||||    
T  15372436 agcctatccctaaacaaacaaagggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaaccaatgaagagaatacatctt 15372337  T
Q  222 gacattttccataagctgca 241  Q
     || ||||||| ||||||||    
T  15372336 aaccttttccaaaagctgca 15372317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 25617644 - 25617525
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    |||| ||||| |||||||| ||||| | ||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||   |||||||   |||||    
T  25617644 agcctatccctaaacaaacaaagggatgctgccaccataaatgataaccaaaagaaaagcacacatttttagctttcaaccaacgaagagaatacatctt 25617545  T
Q  222 gacattttccataagctgca 241  Q
     || ||||||| ||||||||    
T  25617544 aaccttttccaaaagctgca 25617525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 8845723 - 8845574
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgac 224  Q
    ||||||||||||| || |  |||| | ||||||| ||||| || | ||||||||| |||||| |||||||||||||||| |  || ||||| || || ||    
T  8845723 caatccccaaacacacaagaggttgcagccaccacatatggtatc-aaaaggaaaacaaacatttttagctttcaaccacgctagtgaagtgatttttac 8845625  T
Q  225 attttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
    |||||||||||| |||||   | ||||||| |||||||| |||||||||||    
T  8845624 attttccataagttgcatggctaatttaacattattagaaaacaacctatg 8845574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 53050543 - 53050648
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||||||||||| | ||||| |  ||||||||||||||||||||||| | ||| || ||| |||| |||||||||||  | ||||| ||||||||    
T  53050543 agccaatccccaaacaagcaaagggatgttgccaccatatatgataaccaaatgaaaaacacacattttttgctttcaaccatttgagagatgtaatctt 53050642  T
Q  222 gacatt 227  Q
     |||||    
T  53050643 aacatt 53050648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 19653283 - 19653231
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  19653283 tgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 19653231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 33980603 - 33980721
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    |||| ||||| |||||||| | ||| | ||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||   |||||||   |||||    
T  33980603 agcctatccctaaacaaacaaggggatgctgccaccataaatgataac-aaaaggaaagcacacatttttagctttcaaccaacgaagagaatacatctt 33980701  T
Q  222 gacattttccataagctgca 241  Q
     || ||||||| ||||||||    
T  33980702 aaccttttccaaaagctgca 33980721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 40969799 - 40969898
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||||||||||| | |||||    |||||||| |||||||||||||| |||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  40969799 agccaatccccaaacaagcaaagggacgttgccaccacatatgataaccaaatggaaagcacacattttttgctttcaaccacttgagagatgtaatctt 40969898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 7922466 - 7922384
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccag 204  Q
    |||||||||||||||| || | ||| |  |||||||||| ||||||||||||||||||||| ||| |||||| ||| ||||||    
T  7922466 agccaatccccaaacagacaaggggatgttgccaccataaatgataaccaaaaggaaagcacacatttttagtttttaaccag 7922384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 50029063 - 50029115
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||    
T  50029063 tgccaccataaatgataaccaaaaggaaagcacacatttttaactttcaacca 50029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 19232699 - 19232770
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| | |||||| |||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  19232699 ctgccaccacaaatgatatccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 19232770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 27874336 - 27874374
Alignment:
Q  165 ataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  27874336 ataaccaaaaggaaagcacacatttttagctttcaacca 27874374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 30819245 - 30819291
Alignment:
Q  145 ggttactgccaccatatatgataaccaaaaggaaagcaaacactttt 191  Q
    ||||||||||| || |||||||||||||||||||| |||||| ||||    
T  30819245 ggttactgccaacacatatgataaccaaaaggaaaacaaacattttt 30819291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 16897103 - 16897031
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaaca-cttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| | ||||||||||||||||||||| |||  |||| |||||||||||  | ||||| ||||||||    
T  16897103 ctgccaccacaaatgataaccaaaaggaaagcacacatttttttgctttcaaccatttgagagatgtaatctt 16897031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 21479267 - 21479388
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataattgatt 250  Q
    |||||||| ||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||| |  || || ||||||| |||||| ||||||||||    
T  21479267 tgccaccacatatgataaccaaaaggaaagcaaacattcttagatttcaaccaagtaagagaagtgaattttaccttttccaaaagctgtataattgatt 21479366  T
Q  251 taactttattagagaacaacct 272  Q
    |||||||||| || ||||||||    
T  21479367 taactttatttgaaaacaacct 21479388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 268
Target Start/End: Complemental strand, 10462570 - 10462427
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgac 224  Q
    |||||||||||||||| ||||||| |||||||||  |||| |||||||||| |||||||| | |||| ||||| ||||| |  |||||||| || || ||    
T  10462570 caatccccaaacaaacaaagggttgctgccaccacgtatggtaaccaaaagaaaagcaaatatttttcgcttttaaccacgatagagaagtgatttttac 10462471  T
Q  225 attttccataagctgcataattgatttaactttattagagaaca 268  Q
     |||||||||||||||||||  |||||| | |||||||| ||||    
T  10462470 cttttccataagctgcataaccgatttagccttattagaaaaca 10462427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 42766209 - 42766328
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataattgat 249  Q
    ||||||||| | ||| |||||||||| ||| |||| | |||||||||||| |||  | | ||||||||  ||||||||||||| |||||||||||| |||    
T  42766209 ctgccaccacaaatggtaaccaaaagtaaaacaaatatttttagctttcagccaattcaaagaagtaactttgacattttccagaagctgcataatagat 42766308  T
Q  250 ttaactttattagagaacaa 269  Q
    |||||||||||||| |||||    
T  42766309 ttaactttattagaaaacaa 42766328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 32045598 - 32045478
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    |||||||||| |||||||| | ||| | ||||||||||  ||||||||||||||||||||| ||| |||||||||||| ||||   ||||||   |||||    
T  32045598 agccaatccctaaacaaacaaggggatgctgccaccatgaatgataaccaaaaggaaagcacacatttttagctttcagccagcggagagaatacatctt 32045499  T
Q  222 gacattttccataagctgcat 242  Q
     || ||||||| |||||||||    
T  32045498 aactttttccagaagctgcat 32045478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 35376162 - 35376071
Alignment:
Q  172 aaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataattgatttaactttattaga 263  Q
    |||||||| || ||| ||||||||||||||||  | | ||||||||| |||||  |||||| |||||||||||| |||||||||||||||||    
T  35376162 aaaggaaaacagacatttttagctttcaaccaatttaaagaagtaattttgactctttccagaagctgcataatcgatttaactttattaga 35376071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 7446345 - 7446426
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| ||||||||||||||||||||| | | ||||||||||||||||    
T  7446345 agcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaagcacatatttttagctttcaacca 7446426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 10009744 - 10009663
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| |||||||||||||||||| || ||| ||||||||||||||||    
T  10009744 agcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaaacacacatttttagctttcaacca 10009663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 19836720 - 19836825
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||||||||||| | |||||    |||||||| |||||||||||||| |||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  19836720 agccaatccccaaacaagcaaagggacgttgccaccacatatgataaccaaatggaaagcacacattttttgctttcaaccacttgagagatgtaatctt 19836819  T
Q  222 gacatt 227  Q
     |||||    
T  19836820 aacatt 19836825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 36188698 - 36188810
Alignment:
Q  154 caccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataattgatttaa 253  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||||   ||  |||| ||| || || |||||||  |  |||||||| ||||||     
T  36188698 caccacatatgataaccaaaaggaaaacaaacatttttagctttcaaccatccaaaggaagaaatttttaccttttccactaattgcataatagatttag 36188797  T
Q  254 ctttattagagaa 266  Q
    |||||||||||||    
T  36188798 ctttattagagaa 36188810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 25459576 - 25459498
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||||||| | | ||| | ||||||||| ||||||||| ||||||||||||| ||| ||| ||||||||||||    
T  25459576 caatccccaaacaagcaagggggttctgccaccacatatgataatcaaaaggaaagcatacattttaagctttcaacca 25459498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 43470329 - 43470263
Alignment:
Q  153 ccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatc 219  Q
    |||||| ||||| ||||||||||||||||| ||| |||| |||||||||||  ||||||||||||||    
T  43470329 ccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccatttaagagaagtaatc 43470263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 26017750 - 26017669
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| |||||||||||||||||| || ||| |||| |||||||||||    
T  26017750 agcctatccctaaacaaacaaggggatgctgccaccataaatgataaccaaaaggaaaacacacatttttggctttcaacca 26017669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 8933283 - 8933225
Alignment:
Q  124 ccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagca 182  Q
    ||||||||||||||||  | ||| | ||||||||| |||||||||||||||||||||||    
T  8933283 ccaatccccaaacaaataaggggatgctgccaccacatatgataaccaaaaggaaagca 8933225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 14528335 - 14528414
Alignment:
Q  124 ccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    ||||||| ||||||| | ||||| | ||||| ||| ||||| ||||||||||| ||||| ||| |||||| |||||||||    
T  14528335 ccaatcctcaaacaagcaaagggatgctgccgccacatatggtaaccaaaagggaagcacacatttttagatttcaacca 14528414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 19310144 - 19310061
Alignment:
Q  120 ttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||||||||||||   | |||   ||||||||| | ||| ||||||||||||||||| ||| |||| |||||||||||    
T  19310144 ttagccaatccccaaacaagtaaggggacgctgccaccacacatggtaaccaaaaggaaagcacacattttttgctttcaacca 19310061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 38948404 - 38948353
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaac 201  Q
    ||||||||| | ||||||||||||||||||||| ||| |||| |||||||||    
T  38948404 ctgccaccacaaatgataaccaaaaggaaagcacacattttttgctttcaac 38948353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 13840815 - 13840889
Alignment:
Q  144 gggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaat 218  Q
    ||||| ||||||||| |||||| || ||||||||||||| |   ||||||||||||||||   ||||||||||||    
T  13840815 gggttgctgccaccacatatgagaatcaaaaggaaagcacatgtttttagctttcaaccaccgaagagaagtaat 13840889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 25241947 - 25242017
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacactttta 192  Q
    ||||||||||||||||||| | || ||  |||||||  ||||| ||||||||||||||||| ||| |||||    
T  25241947 agccaatccccaaacaaacaagggattgttgccaccgcatatggtaaccaaaaggaaagcatacattttta 25242017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 18740370 - 18740249
Alignment:
Q  145 ggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataa 244  Q
    |||| |||||||||  |||| | |||||||| ||| |||||| |||||||||||| |||   ||| ||||||   ||||| |||| ||  |||||||||     
T  18740370 ggttgctgccaccacgtatggttaccaaaagtaaaacaaacatttttagctttcagccactgaagtgaagtagatttgacttttttcagtagctgcatat 18740271  T
Q  245 ttgatttaactttattagagaa 266  Q
    |||||||||||| |||| ||||    
T  18740270 ttgatttaacttgattaaagaa 18740249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 20248818 - 20248691
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttga---cattttccataagctgcataattg 247  Q
    |||||||| ||||| ||||||||||||||  | ||| |||||||||||| |||   |||||||||||| ||||     ||||||| ||| ||||||||||    
T  20248818 tgccaccacatatggtaaccaaaaggaaaatagacatttttagctttcagccactgaagagaagtaattttgatttttttttccagaagttgcataattg 20248719  T
Q  248 atttaactttattagagaacaacctatg 275  Q
     |||| | || ||||||| |||| ||||    
T  20248718 ttttagcattgttagagagcaacatatg 20248691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 42674941 - 42674993
Alignment:
Q  145 ggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagcttt 197  Q
    |||| ||||||||| |||||||||||||||||||| ||  || ||||||||||    
T  42674941 ggttgctgccaccacatatgataaccaaaaggaaatcattcatttttagcttt 42674993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 12230323 - 12230479
Alignment:
Q  114 caacggttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaa 213  Q
    ||||||| | ||||||| ||||||||| | | ||| ||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||| ||||| |||    
T  12230323 caacggtcaaccaatcctcaaacaaacaaggagttgctgccaccacatatggtaaccaaaaggaaagcaaacatttttcgctttcaaccacgtaagtgaa 12230422  T
Q  214 gtaatcttgacattttccataagctgcataattgatttaactttattagagaacaac 270  Q
    || || || || |||||||||||||||| ||   |||| || |||||||||||||||    
T  12230423 gtgatttttaccttttccataagctgcacaaccaattttacattattagagaacaac 12230479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 268
Target Start/End: Complemental strand, 15045946 - 15045829
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcataattgatt 250  Q
    |||||||| | ||| |||| ||||||||| ||||||  ||||||||||| |||  | | |||| |||| |||||  |||||| |||||||||||| ||||    
T  15045946 tgccaccacaaatggtaactaaaaggaaaacaaacatgtttagctttcagccaatttaaagaaataattttgactctttccagaagctgcataatagatt 15045847  T
Q  251 taactttattagagaaca 268  Q
    || |||||||||| ||||    
T  15045846 tagctttattagaaaaca 15045829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 38891920 - 38891839
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | |||| |||||| ||||||||||| ||||||||| ||| ||||||||||||||||    
T  38891920 agcctatccctaaacaaacaaggggatgctgctaccataaatgataaccaagaggaaagcacacatttttagctttcaacca 38891839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 24732753 - 24732824
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| ||||| ||||||||||||||||| ||| |||| |||||||||||  |||||||  |||||||    
T  24732753 ctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccatttaagagatataatctt 24732824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 41692287 - 41692216
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| |||||||||||| |||||||||| ||| |||| |||||||||||  |||||||  |||||||    
T  41692287 ctgccaccacatatgataaccataaggaaagcacacattttttgctttcaaccatttaagagatataatctt 41692216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 36568467 - 36568415
Alignment:
Q  141 taagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttag 193  Q
    |||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||    
T  36568467 taagggttgctgccaccatatataataatcaaaaggaaagcacacaattttag 36568415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 268
Target Start/End: Complemental strand, 19792 - 19646
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    |||| |||||||||||||| | |||||  |||  ||| |||||||||||||||| |||| ||||| | |||||||| ||| ||||||| ||||| || ||    
T  19792 agcctatccccaaacaaacaacgggttggtgcggccacatatgataaccaaaagaaaagtaaacattcttagcttttaactaggtaagtgaagtgatttt 19693  T
Q  222 gacattttccataagctgcataattgatttaactttattagagaaca 268  Q
     || ||||||| ||||||||||||||||||||||||||| |||||||    
T  19692 taccttttccaaaagctgcataattgatttaactttattggagaaca 19646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 19617379 - 19617226
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||||||||||||| | ||||| ||||||||| |||||  ||||||||| ||||||| || | ||||||||||||||| ||||  ||||  | ||    
T  19617379 agccaatccccaaacaaacaaggggttgctgccaccacatatgtgaaccaaaagaaaagcaagcattcttagctttcaaccagctaagtaaagtgttttt 19617280  T
Q  222 gacattttccataagctgcataattgatttaactttattagagaacaacctatg 275  Q
     || |||||||  ||||||||||||||||| |||||| | ||||||||| ||||    
T  19617279 aaccttttccaacagctgcataattgatttgactttacttgagaacaacatatg 19617226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 17714139 - 17714069
Alignment:
Q  133 aaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||| ||| ||| | ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  17714139 aaacaatctaggggatgctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 17714069  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 33754697 - 33754645
Alignment:
Q  151 tgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  33754697 tgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 33754645  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 26710846 - 26710923
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacatt 227  Q
    ||||||||| | ||||||||||||||||||||| ||| |||| |||||||||||  | ||||| |||||||| |||||    
T  26710846 ctgccaccacaaatgataaccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatcttaacatt 26710923  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 3490367 - 3490296
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| ||||| ||||||||||||||||| ||| |||| |||||||||||  |||||||  |||||||    
T  3490367 ctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccatttaagagatataatctt 3490296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 31933863 - 31933934
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| ||||| ||||||||||||||||| ||| |||| |||||||||||  |||||||  |||||||    
T  31933863 ctgccaccacatatggtaaccaaaaggaaagcacacattttttgctttcaaccatttaagagatataatctt 31933934  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 24991578 - 24991498
Alignment:
Q  122 agccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||| ||||| |||||||| | ||| | ||||||||||| ||||||| ||||| | ||||| ||| ||||||||||||||||    
T  24991578 agcctatccctaaacaaacaaggggatgctgccaccataaatgataatcaaaaag-aagcacacatttttagctttcaacca 24991498  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 33666957 - 33667013
Alignment:
Q  213 agtaatcttgacattttccataagctgcataattgatttaactttattagagaacaa 269  Q
    |||||| | ||| ||||||| ||| |||||||| |||||| ||||||||||||||||    
T  33666957 agtaatttggactttttccaaaagttgcataatagatttagctttattagagaacaa 33667013  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 270
Target Start/End: Original strand, 34358801 - 34358945
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgac 224  Q
    |||||||||||||||  | |||||  |||||||| ||||||||||||||||||||||  ||| ||||||||||||| || ||||| ||||| || || ||    
T  34358801 caatccccaaacaaaaaaggggttgatgccaccacatatgataaccaaaaggaaagcttacatttttagctttcaatcacgtaagtgaagtgatttttac 34358900  T
Q  225 attttccataagctgcataattgatttaactttattagagaacaac 270  Q
     |||||| ||| ||||||||   ||||||| |||||||||||||||    
T  34358901 tttttccgtaaactgcataa-ccatttaacattattagagaacaac 34358945  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 23289919 - 23290019
Alignment:
Q  115 aacggttagccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaag 214  Q
    |||||| ||||||||||||||||||| | |||||  |||||||| || || |||||||||||||| |||||| | |||||||||||||| | ||||||||    
T  23289919 aacggtcagccaatccccaaacaaacaaggggttgttgccaccacatgtggtaaccaaaaggaaatcaaacattcttagctttcaaccaagcaagagaag 23290018  T
Q  215 t 215  Q
    |    
T  23290019 t 23290019  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 17930702 - 17930829
Alignment:
Q  144 gggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatcttgacattttccataagctgcata 243  Q
    ||||| ||||||||| ||| | |||||||| |||||||||||| |||||||||||||||| | ||||| ||| || || || |||||||| || |||| |    
T  17930702 gggttgctgccaccacataaggtaaccaaagggaaagcaaacatttttagctttcaaccatgaaagagtagtcatttttaccttttccatcagttgcaca 17930801  T
Q  244 attgatttaactttattagagaacaacc 271  Q
     ||||| ||||  ||||||| |||||||    
T  17930802 gttgatgtaacaatattagaaaacaacc 17930829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 6469081 - 6469134
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  6469081 ctgccaccataaatgataaccaaaaggaaagcacacatttttagctttcaacca 6469134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 3153790 - 3153694
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||| |||||||| | |||   ||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  3153790 caatccctaaacaaacaaggggacgctgccaccataaatgataaccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 3153694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 39768687 - 39768612
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaa 200  Q
    ||||||||||||| || |  || | ||||||||| |||||||||| |||||||||||||||| |||||||||||||    
T  39768687 caatccccaaacagacaagaggatgctgccaccacatatgataactaaaaggaaagcaaacatttttagctttcaa 39768612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 14163979 - 14164059
Alignment:
Q  123 gccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||||||||  | | ||| | ||||||||| |||||||||||||| |||||||| ||| |||| |||||||||||    
T  14163979 gccaatccccaaacatgcaaggggattctgccaccacatatgataaccaaagggaaagcacacattttttgctttcaacca 14164059  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 10059955 - 10060026
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||| ||||| ||||||||||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  10059955 ctgccgccataaatgataaccaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 10060026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 536384 - 536308
Alignment:
Q  127 atccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    ||||| |||||||| | ||| | ||||||||||| |||||| ||||||||||| || ||| | ||||||||||||||    
T  536384 atccctaaacaaacaaggggatgctgccaccataaatgatagccaaaaggaaatcacacattattagctttcaacca 536308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 79388 - 79459
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| | ||||||||||||||||||||| ||| |||| ||||| |||||  | ||||| ||||||||    
T  79388 ctgccaccacaaatgataaccaaaaggaaagcacacattttttgcttttaaccatttgagagatgtaatctt 79459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 16203104 - 16203029
Alignment:
Q  124 ccaatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttca 199  Q
    ||||| |||||||| || |  |||| ||| ||||| |||||||||||||||||||| || ||| ||||||||||||    
T  16203104 ccaatgcccaaacagacaagaggttgctgtcaccacatatgataaccaaaaggaaaacatacatttttagctttca 16203029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 44939843 - 44939914
Alignment:
Q  150 ctgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaaccaggtaagagaagtaatctt 221  Q
    ||||||||| | ||||||| ||||||||||||| ||| |||| |||||||||||  | ||||| ||||||||    
T  44939843 ctgccaccacaaatgataatcaaaaggaaagcacacattttttgctttcaaccatttgagagatgtaatctt 44939914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 34385389 - 34385467
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    ||||||| |||||||| | ||| | ||||||||||| ||  |||||||||||||| || ||| ||||| ||||||||||    
T  34385389 caatccctaaacaaacaaggggatgctgccaccataaatagtaaccaaaaggaaaacacacatttttatctttcaacca 34385467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 18670668 - 18670628
Alignment:
Q  226 ttttccataagctgcataattgatttaactttattagagaa 266  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  18670668 ttttccactagctgcataatagatttaactttattagagaa 18670628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 30255688 - 30255640
Alignment:
Q  127 atccccaaacaaactaagggttactgccaccatatatgataaccaaaag 175  Q
    |||||||||||||| | ||||| ||||||||| ||||| ||||||||||    
T  30255688 atccccaaacaaacaaggggttgctgccaccacatatggtaaccaaaag 30255640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 5339 - 5261
Alignment:
Q  125 caatccccaaacaaactaagggttactgccaccatatatgataaccaaaaggaaagcaaacacttttagctttcaacca 203  Q
    |||||||||||||||| ||||| | |||  |||||| |||||||||||||||||| || ||| ||||||||||||||||    
T  5339 caatccccaaacaaacaaagggatgctgttaccataaatgataaccaaaaggaaaacatacatttttagctttcaacca 5261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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