View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13895_high_1 (Length: 655)

Name: NF13895_high_1
Description: NF13895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13895_high_1
NF13895_high_1
[»] chr8 (3 HSPs)
chr8 (18-653)||(32144231-32144864)
chr8 (126-197)||(6501488-6501559)
chr8 (139-187)||(29096952-29097000)
[»] chr3 (4 HSPs)
chr3 (254-476)||(28886997-28887214)
chr3 (141-238)||(21135654-21135751)
chr3 (133-192)||(8091412-8091471)
chr3 (133-197)||(1502574-1502638)
[»] chr1 (5 HSPs)
chr1 (138-195)||(31667430-31667487)
chr1 (126-187)||(26462650-26462711)
chr1 (168-197)||(50195460-50195489)
chr1 (144-192)||(264615-264663)
chr1 (141-197)||(19637776-19637832)
[»] chr6 (3 HSPs)
chr6 (134-187)||(27661737-27661790)
chr6 (127-192)||(2468472-2468538)
chr6 (134-186)||(29449682-29449734)
[»] chr5 (5 HSPs)
chr5 (132-184)||(29365005-29365057)
chr5 (165-198)||(10948652-10948685)
chr5 (143-196)||(32932228-32932281)
chr5 (140-184)||(30267531-30267575)
chr5 (126-190)||(35972032-35972096)
[»] chr4 (2 HSPs)
chr4 (165-201)||(47665849-47665885)
chr4 (127-192)||(27131672-27131738)
[»] scaffold0011 (1 HSPs)
scaffold0011 (141-191)||(240022-240072)
[»] chr2 (2 HSPs)
chr2 (141-190)||(18622423-18622472)
chr2 (125-190)||(39459776-39459841)
[»] chr7 (1 HSPs)
chr7 (144-188)||(43160495-43160539)


Alignment Details
Target: chr8 (Bit Score: 594; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 18 - 653
Target Start/End: Complemental strand, 32144864 - 32144231
Alignment:
Q  18 tgatttttgtctcccagttatgtttagctcaaaactatttcttgaagtttttattctatgaaacagtgacatagaaatagtcattgaacaaacatgccac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  32144864 tgatttttgtctcccagttatgtttagctcaaaactatttcttgaagtttttattctatgaaacagtgacatagaaatagtcattgaaca----tgccac 32144769  T
Q  118 tgactcaaacacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacaccggatgcacttttaatttgt 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144768 tgactcaaacacgttggcattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacaccggatgcacttttaatttgt 32144669  T
Q  218 agtgtcggtacaacatagttaataattgttacgatcaactcccattgacaatatttatttatttgacataatccaatacttgatttttcctgaaaattat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32144668 agtgtcggtacaacatagttaataattgttacgatcaactcccattgacaatatttatttatatgacataatccaatacttgatttttcctgaaaattat 32144569  T
Q  318 ctacaaaagaaattgctcctatcatttttcaatattcttcttcagttcagaacaaatcaaataaaacattgtaattcacccaaaatctgaaaaactcaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144568 ctacaaaagaaattgctcctatcatttttcaatattcttcttcagttcagaacaaatcaaataaaacattgtaattcacccaaaatctgaaaaactcaaa 32144469  T
Q  418 tttccttttctataaatccttacttgacttcttacaatattcttcaatctcatcaaattatcaccaaagtagggtaaaagtgtaactgagtctatactc- 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32144468 tttccttttctataaatccttacttgacttcttacaatattcttcaatctcatcaaattatcaccaaagtagggtaaaagtgtaactgagtctatactca 32144369  T
Q  517 -gagtaaaataaataccaaatgaagtgttaaaaataaatacactgcatcatacttcatacctgagttgcagcatgtttatcatcccaactaaaccatgat 615  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144368 agagtaaaataaataccaaatgatgtgttaaaaataaatacactgcatcatacttcatacctgagttgcagcatgtttatcatcccaactaaaccatgat 32144269  T
Q  616 acacttcctatactaccaaactcattttcattcatctc 653  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  32144268 acacttcctatactaccaaactcattttcattcgtctc 32144231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 6501488 - 6501559
Alignment:
Q  126 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 197  Q
    ||||||||||| |||||||||||| ||| |||   ||| |||||||||| |||||||||||||||| |||||    
T  6501488 acacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcggtgtcagacac 6501559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 29096952 - 29097000
Alignment:
Q  139 ggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 187  Q
    ||||||||||||||||||||   || || ||||||||||||||||||||    
T  29096952 ggtaataatttaagaaaataaattaattgaatgtaatcacatgtgtcgg 29097000  T

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Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 254 - 476
Target Start/End: Original strand, 28886997 - 28887214
Alignment:
Q  254 aactcccattgacaatatttatttatttgacataatccaatacttgatttttcctgaaaattatctacaaaagaaattgctcctatcatttttcaatatt 353  Q
    ||||||| | |||| ||||||||||| | |||||||||| ||||||||||| |||||||||  ||||||||| |||||| || | | |||||| ||||||    
T  28886997 aactcccttggacattatttatttatctaacataatccattacttgatttt-cctgaaaatc-tctacaaaataaattgttcattttatttttaaatatt 28887094  T
Q  354 cttcttcagttcagaacaaatcaaataaaacattgtaattcacccaaaatctgaaaaactcaaatttccttttctataaa-tccttacttgacttcttac 452  Q
    | ||    ||||| ||   || ||| |||| ||| || ||| || | |||||||||||||||| ||||||||||| |||| |||| |  |||||||||||    
T  28887095 cgtcg---gttcaaaatgcataaaaaaaaa-attatagttcccctacaatctgaaaaactcaattttccttttctttaaaatcctgagctgacttcttac 28887190  T
Q  453 aatattcttcaatctcatcaaatt 476  Q
    || |||||||||||||| ||||||    
T  28887191 aagattcttcaatctcaccaaatt 28887214  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 21135654 - 21135751
Alignment:
Q  141 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacaccggatgcacttttaatttgtagtgtcggtacaacatagtta 238  Q
    ||||||||||||| ||| | ||| || || | || |||||||||||||||| |||||||||  |||  ||||| || ||||||||| |||||||||||    
T  21135654 taataatttaagataatggaataattgaaagcaaccacatgtgtcggtgtcagacaccggacacaccattaatgtgaagtgtcggtgcaacatagtta 21135751  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 8091471 - 8091412
Alignment:
Q  133 gacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcg 192  Q
    |||| |||||||||||||||||||||| ||  || |||||||| |||||||||| |||||    
T  8091471 gacactggtaataatttaagaaaataggattattgaatgtaattacatgtgtcgatgtcg 8091412  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 1502574 - 1502638
Alignment:
Q  133 gacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 197  Q
    |||| |||||||||| |||||||||   ||| || |||||||||||||||||| |||| ||||||    
T  1502574 gacactggtaataatctaagaaaatgacataattgaatgtaatcacatgtgtctgtgttggacac 1502638  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 31667430 - 31667487
Alignment:
Q  138 tggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggac 195  Q
    |||||||||||| |||||||   ||| |||||||||||||||||||||||||||||||    
T  31667430 tggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcggac 31667487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 26462711 - 26462650
Alignment:
Q  126 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 187  Q
    |||||| |||| || |||||||||||||||||   ||| || ||||||||||||||||||||    
T  26462711 acacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgtcgg 26462650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 50195489 - 50195460
Alignment:
Q  168 aatgtaatcacatgtgtcggtgtcggacac 197  Q
    ||||||||||||||||||||||||||||||    
T  50195489 aatgtaatcacatgtgtcggtgtcggacac 50195460  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 264615 - 264663
Alignment:
Q  144 taatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcg 192  Q
    |||||||||||| ||  ||| |||||||||||||||||||| |||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcg 264663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 19637776 - 19637832
Alignment:
Q  141 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 197  Q
    |||||||||||||||||   ||  || |||||||||| |||||||||||||||||||    
T  19637776 taataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 27661737 - 27661790
Alignment:
Q  134 acattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 187  Q
    |||||| || ||||||||||||||| |||| || ||||||||||||||||||||    
T  27661737 acattgatagtaatttaagaaaataatatatttcaatgtaatcacatgtgtcgg 27661790  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 2468538 - 2468472
Alignment:
Q  127 cacgttgacattggtaataatttaagaaaatagta-tagttaaatgtaatcacatgtgtcggtgtcg 192  Q
    ||||| ||||||||||||||||||||||||| | | || || ||||||| ||||||||| |||||||    
T  2468538 cacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 2468472  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 29449682 - 29449734
Alignment:
Q  134 acattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcg 186  Q
    ||||||||| |||||| ||||||||  ||| || |||||||||||||||||||    
T  29449682 acattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 29365005 - 29365057
Alignment:
Q  132 tgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgt 184  Q
    ||||| ||| |||||||||||||||| ||||| ||||||||||||||| ||||    
T  29365005 tgacaatggcaataatttaagaaaatggtataattaaatgtaatcacaggtgt 29365057  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 10948685 - 10948652
Alignment:
Q  165 ttaaatgtaatcacatgtgtcggtgtcggacacc 198  Q
    |||||||||||||||||||||||||| |||||||    
T  10948685 ttaaatgtaatcacatgtgtcggtgttggacacc 10948652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 32932281 - 32932228
Alignment:
Q  143 ataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggaca 196  Q
    ||||||| |||||||| |||| |  ||||||||||||||||||||||| |||||    
T  32932281 ataattttagaaaataatataatccaatgtaatcacatgtgtcggtgttggaca 32932228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 30267575 - 30267531
Alignment:
Q  140 gtaataatttaagaaaatagtatagttaaatgtaatcacatgtgt 184  Q
    |||||||||| |||||||| |||| ||||||||||||||| ||||    
T  30267575 gtaataatttgagaaaataatataattaaatgtaatcacaagtgt 30267531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 35972096 - 35972032
Alignment:
Q  126 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 190  Q
    |||||||||  || |||||||||||| ||||||| ||| || |||||||||||||| ||| ||||    
T  35972096 acacgttgattttagtaataatttaataaaatagaataattgaatgtaatcacatgagtcagtgt 35972032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 47665885 - 47665849
Alignment:
Q  165 ttaaatgtaatcacatgtgtcggtgtcggacaccgga 201  Q
    |||||||||||||||||||||||||| ||||||||||    
T  47665885 ttaaatgtaatcacatgtgtcggtgttggacaccgga 47665849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 27131738 - 27131672
Alignment:
Q  127 cacgttgacattggtaataatttaagaaaatagta-tagttaaatgtaatcacatgtgtcggtgtcg 192  Q
    ||||| ||||||||||||||||||||||||| | | || || ||||||| ||||||||| |||||||    
T  27131738 cacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 27131672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 240072 - 240022
Alignment:
Q  141 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtc 191  Q
    ||||||||| |||||||| |||| || |||||||||| |||||||||||||    
T  240072 taataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtc 240022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 18622423 - 18622472
Alignment:
Q  141 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 190  Q
    |||||||||||||||||   ||| ||||||| ||||||||||||||||||    
T  18622423 taataatttaagaaaatgacataattaaatgcaatcacatgtgtcggtgt 18622472  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 39459776 - 39459841
Alignment:
Q  125 aacacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 190  Q
    ||||||| |||||||||||||||||||| ||||    || || |||||||||||| ||||||||||    
T  39459776 aacacgtcgacattggtaataatttaaggaaatgaattaattgaatgtaatcacacgtgtcggtgt 39459841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 43160495 - 43160539
Alignment:
Q  144 taatttaagaaaatagtatagttaaatgtaatcacatgtgtcggt 188  Q
    |||||||||||||||  ||| || |||||||||||||||||||||    
T  43160495 taatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

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