View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13895_high_5 (Length: 246)

Name: NF13895_high_5
Description: NF13895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13895_high_5
NF13895_high_5
[»] chr1 (2 HSPs)
chr1 (88-234)||(31523517-31523663)
chr1 (1-46)||(31523474-31523519)
[»] scaffold0008 (2 HSPs)
scaffold0008 (169-234)||(51914-51979)
scaffold0008 (173-234)||(64370-64431)
[»] chr4 (1 HSPs)
chr4 (190-234)||(18096360-18096404)
[»] chr2 (1 HSPs)
chr2 (190-234)||(37853966-37854010)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 31523517 - 31523663
Alignment:
Q  88 tgtgaaagttgttaacattgtgttatataattatcttatatcacatgattgcttttgaaattggaattgaagttttttaatttcatttcctctttgtcca 187  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31523517 tgtgaaagttgttaataatgtgttatataattatcttatatcacatgattgcttttgaaatttgaattgaagttttttaatttcatttcctctttgtcca 31523616  T
Q  188 gaattatcatccctctagggtgcttactcttgtataccaaccatttg 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31523617 gaattatcatccctctagggtgcttactcttgtataccaaccatttg 31523663  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31523474 - 31523519
Alignment:
Q  1 tagattgttacatcagtgcacattataactagccctcatatcttgt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31523474 tagattgttacatcagtgcacattataactagccctcatatcttgt 31523519  T

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Target: scaffold0008 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 51979 - 51914
Alignment:
Q  169 ttcatttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatttg 234  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51979 ttcatttcctctctgtgcagaattatcatccctctagggtgcttactcttgtataccaaccatttg 51914  T

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Target: scaffold0008; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 64431 - 64370
Alignment:
Q  173 tttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatttg 234  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||    
T  64431 tttcctctttgtgcagaaatatcatccctctagggtgcttactcttgtatatcagccatttg 64370  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 18096360 - 18096404
Alignment:
Q  190 attatcatccctctagggtgcttactcttgtataccaaccatttg 234  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||    
T  18096360 attatcatccctccagggtgcttacacttgtataccagccatttg 18096404  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 37853966 - 37854010
Alignment:
Q  190 attatcatccctctagggtgcttactcttgtataccaaccatttg 234  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||    
T  37853966 attatcatccctccagggtgcttacacttgtataccagccatttg 37854010  T

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