View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13895_low_2 (Length: 522)
Name: NF13895_low_2
Description: NF13895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13895_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 111 - 515
Target Start/End: Complemental strand, 19470125 - 19469721
Alignment:
| Q |
111 |
aaacaaaaactacagattaaataaaggaatagtcacaatacaaattaatggattcaagtacttcctcccaccaaatcctatcaggaacctgaagagccaa |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19470125 |
aaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagtacttcctctaaccaaatcctatcaggaacctgaagagccaa |
19470026 |
T |
|
| Q |
211 |
atgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagttttacttaacgtgaaaacatctaataatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19470025 |
atgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagttttacttaacctgaaaacatctaataatat |
19469926 |
T |
|
| Q |
311 |
tccctagataagttccaggttcttctccagcactgatgatcttcttcagtaacccttcattatcactcaaatcccactatgcgaaaacagcagtccttga |
410 |
Q |
| |
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|| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
19469925 |
tctctagataagttccaggttcttcagcagcactaatgatcttcttcactaacccttcattatcactgaaattccactgtgcgaaaacagcagtccttga |
19469826 |
T |
|
| Q |
411 |
ccaaaatcatagtcttatacaaagcataaccctaagcttcttctggttgaacatagtcatccctcttccaggttgttgttgctaaaacatgtccatcttc |
510 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19469825 |
ccaaaatcatagtcttatacaaagcataaccctcagcttcttctggttgaacaaagtcatccctcttccaggttgttgttgctaaaacatgtccatcttc |
19469726 |
T |
|
| Q |
511 |
atctc |
515 |
Q |
| |
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||||| |
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| T |
19469725 |
atctc |
19469721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 273 - 514
Target Start/End: Original strand, 47865355 - 47865596
Alignment:
| Q |
273 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttctccagcactgatgatcttcttcagtaacccttcatta |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
47865355 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcatta |
47865454 |
T |
|
| Q |
373 |
tcactcaaatcccactatgcgaaaacagcagtccttgaccaaaatcatagtcttatacaaagcataaccctaagcttcttctggttgaacatagtcatcc |
472 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
47865455 |
tcactcaaactccactgtgcgaaaacagcagtccttgaccaaaatcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatcc |
47865554 |
T |
|
| Q |
473 |
ctcttccaggttgttgttgctaaaacatgtccatcttcatct |
514 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
47865555 |
ctctttcaggttgtcgttgctaaaacatgtccatcttcatct |
47865596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 110 - 281
Target Start/End: Original strand, 47864317 - 47864488
Alignment:
| Q |
110 |
gaaacaaaaactacagattaaataaaggaatagtcacaatacaaattaatggattcaagtacttcctcccaccaaatcctatcaggaacctgaagagcca |
209 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
47864317 |
gaaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagcacttcctccaaccaaatcctatcaggaacctgaagagcca |
47864416 |
T |
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| Q |
210 |
aatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagtt |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
47864417 |
aatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagtt |
47864488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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