View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13895_low_4 (Length: 454)
Name: NF13895_low_4
Description: NF13895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13895_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 1326273 - 1325848
Alignment:
| Q |
15 |
acctctaaccatgagattatagcttccaatgtagaaccgtggccacatcttttacctaacaaacaacaaaaatttagtggtgaaagtgaaacaccataaa |
114 |
Q |
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| T |
1326273 |
acctctaaccatgagattatagcttccaatgtagaaccgtggccacatcttttacctaacaaacaacaaaaatttagtggtgaaagtgaaacaccataaa |
1326174 |
T |
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| Q |
115 |
ttacactttgctcttggcttgtttatttacttatatatgcaacaaaagtaacattattataatataatttggagctttgtattaatgattgatggagaat |
214 |
Q |
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| T |
1326173 |
ttacactttgctcttaacttgtttatttacttatatatgcaacaaaagtaacattattataatataatttggagctatgtaaaaatgattgatggagaat |
1326074 |
T |
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| Q |
215 |
atataatatccatctacatttatttattttagaatttagcttataattaattaacaagggtaattacatatagtacattttagagaggagaatacttagg |
314 |
Q |
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| T |
1326073 |
atataatttccatctacatttatttattttggaatttagcttataattaattaacaagggtaattacatatagtacattttagagaggagaatacttagg |
1325974 |
T |
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| Q |
315 |
taatcaagatgtggtcattgatatatggttgatgttcatacggagaaagttgaagaaaggccaaattcaagtccccaaagctcaaaagatcctttcacaa |
414 |
Q |
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| T |
1325973 |
taatcaagatgtggtcattgatatatggttgatgttcatacggagaaagttgaagaaaggccaaattcaagtccccaaagctcaaaagatcctttcacaa |
1325874 |
T |
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| Q |
415 |
agtcatagtatcctccttttagtgcc |
440 |
Q |
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| T |
1325873 |
agtcatagtatcctccttttagtgcc |
1325848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 1342827 - 1342758
Alignment:
| Q |
30 |
attatagcttccaatgtagaaccgtggccacatcttttacctaacaaacaacaaaaatttagtggtgaaa |
99 |
Q |
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| T |
1342827 |
attattgcttccattgcagaatcatggtcacatattttacctaacaaacaacaaaaatttactggtgaaa |
1342758 |
T |
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