View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13895_low_5 (Length: 429)
Name: NF13895_low_5
Description: NF13895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13895_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 42913444 - 42913034
Alignment:
| Q |
15 |
caattgagaagagtgaataaggagaaaatgtgtgaagtttatggaagtgtttaattagagagagtggttaattacattaatcactttaagttaagtttca |
114 |
Q |
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| T |
42913444 |
caattgagaagagtgaataaggagaaaatgtgtgaagtttatggaagtgtttaattagagagagtggttaattacattaatcactttaagttaagtttca |
42913345 |
T |
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| Q |
115 |
ttatgtcttgttg---aatgtcttcttcttgttacttgtttagtggtgtaataaaatagctatagtacttactaccagtagctaaatgtatgggtgatgt |
211 |
Q |
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| T |
42913344 |
ctatgtcttgttgtttaatgtctttttcttgttacttgtttagtggtgtaataaaatagctatagtacttactactagtagctaaatgtatgggtgatgt |
42913245 |
T |
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| Q |
212 |
gatgacccatttgaatttacctaatgtaaccttttcagtaatatgttcctttgtatgattatgcattttggctttgtttg-tttgttataataaatatgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
42913244 |
gatgacccatttgaatttacctaatgtaaccttttcagtaatatgttcctttgtatgattatgcattttggctttgtttgttttgttataataaacatgt |
42913145 |
T |
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| Q |
311 |
aagattgttgcaatatctttctttgagtaatgtcccttaatcacgtttactcatacnnnnnnnnggtactaaaaagagtgcaaattatcaaatacaaata |
410 |
Q |
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| T |
42913144 |
aagattgttacaatatctttctttgagtaatgtcccttaatcacgtttacacgtac-tttttttggtactaaaaagagtgcaaattatcacatacaaata |
42913046 |
T |
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| Q |
411 |
gttcatataaac |
422 |
Q |
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| T |
42913045 |
gttcacataaac |
42913034 |
T |
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