View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13895_low_6 (Length: 275)
Name: NF13895_low_6
Description: NF13895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13895_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 52369451 - 52369180
Alignment:
| Q |
1 |
tgtgcagatttgtgggacattatatttatgggggtgtctgttactgatttgtcaaataatgggtccaataagatgagtacttcaagcaggttgagtgatt |
100 |
Q |
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| T |
52369451 |
tgtgcagatttgtgggacattatatttatgggggtgtctgttactgatttgtcaaat---gggtccaataagatgagtacttcaagcaggttgagtgatt |
52369355 |
T |
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| Q |
101 |
gcagacctcaacacatgattcttgaaagaaaccattcatttgttcaagataaagaacaaaacatggattcatccaaaagtgatcaattgaaacataaaca |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
52369354 |
gcagacctcaacatatgattcttgaaagaaaccattcatttgttcaagataaagaacagaacatggattcaaccaaaagtgatcaattgaaacataaaca |
52369255 |
T |
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| Q |
201 |
agttccagtgatttctctgcctgaagcacttgttttttcttctccaagaccagtttctgtgcttgatgatgctgc |
275 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |||||| |
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| T |
52369254 |
agttccattgatttctctgcctgaagcacttgttttttcttctccaaggccagtttctgagctcgatgctgctgc |
52369180 |
T |
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