View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13895_low_9 (Length: 233)

Name: NF13895_low_9
Description: NF13895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13895_low_9
NF13895_low_9
[»] chr4 (4 HSPs)
chr4 (19-220)||(7174859-7175060)
chr4 (121-205)||(19536469-19536556)
chr4 (119-192)||(15849897-15849973)
chr4 (59-105)||(14804104-14804150)
[»] chr3 (4 HSPs)
chr3 (119-166)||(22261031-22261078)
chr3 (119-166)||(22267421-22267468)
chr3 (121-163)||(30215466-30215508)
chr3 (115-171)||(30215923-30215979)
[»] chr7 (5 HSPs)
chr7 (122-219)||(9259875-9259975)
chr7 (122-219)||(9310319-9310419)
chr7 (133-219)||(20931715-20931805)
chr7 (125-218)||(11229738-11229834)
chr7 (119-171)||(16201816-16201868)
[»] scaffold0423 (1 HSPs)
scaffold0423 (119-166)||(12520-12567)
[»] scaffold0300 (1 HSPs)
scaffold0300 (119-219)||(12902-13006)
[»] chr2 (2 HSPs)
chr2 (127-212)||(11728204-11728292)
chr2 (134-166)||(30745237-30745269)
[»] scaffold0501 (1 HSPs)
scaffold0501 (126-194)||(10142-10213)
[»] chr6 (1 HSPs)
chr6 (119-171)||(21674329-21674381)
[»] chr5 (1 HSPs)
chr5 (125-192)||(23276298-23276368)
[»] scaffold0005 (1 HSPs)
scaffold0005 (59-105)||(35577-35623)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 7174859 - 7175060
Alignment:
Q  19 actttaccttctttcgcggcagagtttcaagaatagccctttttctccatgggtatcacatgccaacccgtatattctgtatgctttgatgctactgtaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  7174859 actttaccttctttcgcggcagagtttcaagaatagcactttttctccaagggtatcacatgccagcctgtatattttgtatgctttgatgctactgtaa 7174958  T
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccctgtatataagagaatagtcttagacaaaattaggtcaagagttcatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174959 attttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccctgtatataagagaatagtcttagacaaaattaggtcaagagttcatt 7175058  T
Q  219 tc 220  Q
    ||    
T  7175059 tc 7175060  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 19536469 - 19536556
Alignment:
Q  121 tttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccct---gtatataagagaatagtcttagacaaaattagg 205  Q
    |||||||||  |||||||||||||||  |||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||    
T  19536469 tttgtgagtagtagaaagttactaagatcattagtgagtgtgactaagcccaatagtatataagagaatagtcttagacaaaattagg 19536556  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 15849897 - 15849973
Alignment:
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaatagtctt 192  Q
    ||||| |||||| ||||| |||||||||||||||||||| |||||||| ||||    ||||||||||||||||||||    
T  15849897 attttatgagtggtagaaggttactaagtccattagtgaatgtgactaagcccaatagtatataagagaatagtctt 15849973  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 14804150 - 14804104
Alignment:
Q  59 ttttctccatgggtatcacatgccaacccgtatattctgtatgcttt 105  Q
    |||||||||||||||||||||| || || ||||||| ||||||||||    
T  14804150 ttttctccatgggtatcacatgtcagcctgtatattttgtatgcttt 14804104  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 22261078 - 22261031
Alignment:
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgacta 166  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22261078 attttgtgagtgatagaaagttactaagttcattagtgagtgtgacta 22261031  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 22267421 - 22267468
Alignment:
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgacta 166  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22267421 attttgtgagtgatagaaagttactaagttcattagtgagtgtgacta 22267468  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 30215508 - 30215466
Alignment:
Q  121 tttgtgagtgatagaaagttactaagtccattagtgagtgtga 163  Q
    |||||||||||||||||||||||||||   |||||||||||||    
T  30215508 tttgtgagtgatagaaagttactaagttggttagtgagtgtga 30215466  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 30215923 - 30215979
Alignment:
Q  115 gtaaattttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccc 171  Q
    ||||| |||||| ||||||||||| ||||||| |  |||||||||||||||| ||||    
T  30215923 gtaaaatttgtgggtgatagaaagctactaagccggttagtgagtgtgactaagccc 30215979  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 9259975 - 9259875
Alignment:
Q  122 ttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaatagtcttagacaaaattaggtcaagagttcatt 218  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||| ||||    ||||||||||||||| |||| |  |||||||| |||||||||||||    
T  9259975 ttgtgagttatagaaaattactaagtccattattgagtatgactaagcccaagagtatataagagaataatctttgtgaaaattagatcaagagttcatt 9259876  T
Q  219 t 219  Q
    |    
T  9259875 t 9259875  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 9310319 - 9310419
Alignment:
Q  122 ttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaatagtcttagacaaaattaggtcaagagttcatt 218  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||| ||||    ||||||||||||||| |||| |  |||||||| |||||||||||||    
T  9310319 ttgtgagttatagaaaattactaagtccattattgagtatgactaagcccaagagtatataagagaataatctttgtgaaaattagatcaagagttcatt 9310418  T
Q  219 t 219  Q
    |    
T  9310419 t 9310419  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 20931715 - 20931805
Alignment:
Q  133 agaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaa-tagtcttagacaaaattaggtcaagagttcattt 219  Q
    ||||||||| ||||| |||||||||||||||||| ||||    ||||||||||||| |||||||  | |||||||||||||||||||||||    
T  20931715 agaaagttattaagttcattagtgagtgtgactaagcccaagagtatataagagaagtagtctttaagaaaattaggtcaagagttcattt 20931805  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 11229738 - 11229834
Alignment:
Q  125 tgagtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaa-tagtcttagacaaaattaggtcaagagttcatt 218  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||||    ||||||||||||| ||||||| |   |||||| ||||||||||||||    
T  11229738 tgagtggtagaaagttactaagtccattagtgagtgtggctaagcccaagagtatataagagaagtagtctttg-tgaaattatgtcaagagttcatt 11229834  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 16201816 - 16201868
Alignment:
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccc 171  Q
    ||||| |||| | |||||||||||||||||||||||||||||| |||| ||||    
T  16201816 attttatgagaggtagaaagttactaagtccattagtgagtgtcactaagccc 16201868  T

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Target: scaffold0423 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 12520 - 12567
Alignment:
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgacta 166  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  12520 attttatgagtggtagaaagttactaagtccattagtgagtgtgacta 12567  T

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Target: scaffold0300 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 12902 - 13006
Alignment:
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaa-tagtcttagacaaaattaggtcaagagtt 214  Q
    ||||| ||||||| ||||||||||||||| |||| ||||| ||||||| ||||    |||||||| |||| ||||||| |  ||||||||||||||||||    
T  12902 attttatgagtgaaagaaagttactaagtacatttgtgagggtgactaagcccaaaagtatataacagaagtagtctttgtgaaaattaggtcaagagtt 13001  T
Q  215 cattt 219  Q
    |||||    
T  13002 cattt 13006  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 11728204 - 11728292
Alignment:
Q  127 agtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaatagtcttagacaaaattaggtcaagag 212  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||    ||||||| |||||||||||| |  |||||||||| |||||    
T  11728204 agtggtagaaagttattaagtccattagtgagtgtgactaagcccaagagtatataggagaatagtctttgtaaaaattaggtaaagag 11728292  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 30745237 - 30745269
Alignment:
Q  134 gaaagttactaagtccattagtgagtgtgacta 166  Q
    ||||||||||||||| |||||||||||||||||    
T  30745237 gaaagttactaagtcaattagtgagtgtgacta 30745269  T

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Target: scaffold0501 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 10142 - 10213
Alignment:
Q  126 gagtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaatagtcttag 194  Q
    |||| ||||||||||||||||  |||||||||||||||||| || |    ||||||||||||||||||||||    
T  10142 gagttatagaaagttactaagctcattagtgagtgtgactaagctcaagagtatataagagaatagtcttag 10213  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 21674381 - 21674329
Alignment:
Q  119 attttgtgagtgatagaaagttactaagtccattagtgagtgtgactatgccc 171  Q
    ||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||    
T  21674381 attttatgagtgatagaaagttactaagcccaatagtgagtatgactaagccc 21674329  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 23276298 - 23276368
Alignment:
Q  125 tgagtgatagaaagttactaagtccattagtgagtgtgactatgccc---tgtatataagagaatagtctt 192  Q
    |||||| ||||||||||||||| |||||||||| |||| ||| ||||    ||||||||||||||||||||    
T  23276298 tgagtggtagaaagttactaagcccattagtgaatgtggctaagcccaagagtatataagagaatagtctt 23276368  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 35577 - 35623
Alignment:
Q  59 ttttctccatgggtatcacatgccaacccgtatattctgtatgcttt 105  Q
    |||||||||||||||||||||| || || ||||||| ||||||||||    
T  35577 ttttctccatgggtatcacatgtcagcctgtatattttgtatgcttt 35623  T

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