View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_high_1 (Length: 746)
Name: NF13896_high_1
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 400 - 730
Target Start/End: Original strand, 53842272 - 53842602
Alignment:
| Q |
400 |
gggaaatagtcatttatacctgaattccgttaggcgagttctgcgccgtgagaacacgaacggaagactcattctccggcaacagttgagggtgaaatat |
499 |
Q |
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| T |
53842272 |
gggaaatagtcatttatacctgaattccgttaggcgagttctgcgccgtgagaacacgaacggaagactcattctcctgcaacggttgagggtgaaatat |
53842371 |
T |
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| Q |
500 |
gttaacggcggcaacttttggtgcaagcttcaacaatgagaatttgaacgcatctgagtctaaaggactatgcagaaaaagatcagaattaggatactct |
599 |
Q |
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| T |
53842372 |
gttaacggcggcaacttttggtgcaagcttcaacaatgagaatttgaacgcatctgagtctaaaggactatgcagaaaaagatcagaattaggatactct |
53842471 |
T |
|
| Q |
600 |
tttaatatcatctccaatatcgaaggaccagttaattcaaatcttctagcaccaccaaccaaacatacagcaattttggatcgtaacaattcatcttttg |
699 |
Q |
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| T |
53842472 |
tttaatatcatctccaatatcgaaggaccagttaattcaaatcttctagcaccaccaaccaaacatacagcaattttggatcgtaacaattcatcttttg |
53842571 |
T |
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| Q |
700 |
aaggtgaagaattagcagtgttgataaaagg |
730 |
Q |
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| T |
53842572 |
aaggtgaagaattagcagtgttgataaaagg |
53842602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 417 - 707
Target Start/End: Original strand, 53843992 - 53844282
Alignment:
| Q |
417 |
acctgaattccgttaggcgagttctgcgccgtgagaacacgaacggaagactcattctccggcaacagttgagggtgaaatatgttaacggcggcaactt |
516 |
Q |
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| T |
53843992 |
acctggattccgttaggcaacttgtgcgccgtgagaacacgaacaaaagactcattctcctggaactattgagggcgaaatattttaacagcagcaacat |
53844091 |
T |
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| Q |
517 |
ttggtgcaagcttcaacaatgagaatttgaacgcatctgagtctaaaggactatgcagaaaaagatcagaattaggatactcttttaatatcatctccaa |
616 |
Q |
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| T |
53844092 |
ttggcgcaaacttgagaaatgagaacttgaatgaatctgagtctaacggactatgcaagaaaagatccgaattcgggtactctttcagtatcatttccaa |
53844191 |
T |
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| Q |
617 |
tatcgaaggaccagttaattcaaatcttctagcaccaccaaccaaacatacagcaattttggatcgtaacaattcatcttttgaaggtgaa |
707 |
Q |
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| T |
53844192 |
tattgaaggtcccgttaattcgaaccttctagcaccaccaaccaaacacaccgcaattttggatcgtaacaattcatctttcgaaggtgaa |
53844282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 47036881 - 47036729
Alignment:
| Q |
1 |
cggttgtcatgtgaatgctctcttctcctccataggaccatagccatcttgcttataaaggaagnnnnnnntggaccaaagtcatatctttcttttgnnn |
100 |
Q |
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| T |
47036881 |
cggttgtcatgtgaatgctctcttctcctccataggaccatagccatcttgcttataaaggaag-aaaaaatggaccaaagtcatatctttcttttgttt |
47036783 |
T |
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| Q |
101 |
nnnnatctatcttttatgatgaaaagggtgcttcagaactaaaattgcaaagtg |
154 |
Q |
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| T |
47036782 |
ttttatctatcttttatgatgaaaagggtgcttcagaactaaaattgcaaagtg |
47036729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 53842086 - 53842170
Alignment:
| Q |
213 |
ctcctttgtacgttaccatcctaaataaactttctgaatgacagatgatgacaaagaaaagtagttccatcgaacaccaaacatg |
297 |
Q |
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| T |
53842086 |
ctcctttttacgttaccatcctaaataaactttctgaatgacagatgatgacaaagaaaagtagttccatcgaacaccaaacatg |
53842170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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