View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13896_high_10 (Length: 488)

Name: NF13896_high_10
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13896_high_10
NF13896_high_10
[»] chr3 (7 HSPs)
chr3 (15-462)||(1727107-1727555)
chr3 (201-421)||(15669120-15669337)
chr3 (362-407)||(13147007-13147052)
chr3 (362-404)||(15841106-15841148)
chr3 (362-407)||(1061431-1061476)
chr3 (362-407)||(12240464-12240509)
chr3 (362-407)||(18004834-18004879)
[»] chr6 (5 HSPs)
chr6 (179-286)||(19220144-19220251)
chr6 (10-170)||(17234088-17234249)
chr6 (362-407)||(17611499-17611544)
chr6 (362-407)||(17780873-17780918)
chr6 (362-407)||(22383858-22383903)
[»] chr4 (2 HSPs)
chr4 (75-304)||(11450873-11451103)
chr4 (75-305)||(11543631-11543862)
[»] chr7 (4 HSPs)
chr7 (264-417)||(24832055-24832208)
chr7 (224-292)||(4447123-4447191)
chr7 (15-103)||(20093884-20093972)
chr7 (362-407)||(13177379-13177424)
[»] chr2 (1 HSPs)
chr2 (362-407)||(24804576-24804621)
[»] scaffold0382 (2 HSPs)
scaffold0382 (362-407)||(4230-4275)
scaffold0382 (362-407)||(12613-12658)
[»] scaffold0211 (1 HSPs)
scaffold0211 (362-407)||(2629-2674)
[»] chr8 (3 HSPs)
chr8 (354-407)||(23802576-23802629)
chr8 (362-407)||(3840826-3840871)
chr8 (362-407)||(23790529-23790574)
[»] chr1 (2 HSPs)
chr1 (362-407)||(19162628-19162673)
chr1 (362-407)||(22652536-22652581)
[»] scaffold0010 (1 HSPs)
scaffold0010 (362-407)||(112857-112902)
[»] chr5 (3 HSPs)
chr5 (362-407)||(13531066-13531111)
chr5 (362-407)||(23485971-23486016)
chr5 (362-407)||(25182199-25182244)
[»] scaffold0892 (1 HSPs)
scaffold0892 (362-406)||(1346-1390)
[»] scaffold0016 (1 HSPs)
scaffold0016 (359-407)||(197574-197622)
[»] scaffold0012 (1 HSPs)
scaffold0012 (359-407)||(135591-135639)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 462
Target Start/End: Original strand, 1727107 - 1727555
Alignment:
Q  15 caaaggagaatgaattagtttctcagtagaagcacctcttaagaggaagcaggttttggagaaatcaaagaaacatccttgtgctgagttcatacaaaat 114  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||| | |||||||||||||||| ||||| |||||||||||||||||||    
T  1727107 caaagaagaatgaattagtttctcagtagaagcaccgcttaagaggatgcatgttctagagaaatcaaagaaacctccttatgctgagttcatacaaaat 1727206  T
Q  115 ggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtcaaagtcaagggctttagagtctaaggatctaatcaaatcaaaac 213  Q
    |||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1727207 ggtatgtattcctactttgttctaaaagctggaaaagctaaggttcttaacaagtcaaagtcaagggctttagagtctaaggatctaatcaaatcaaaac 1727306  T
Q  214 caaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaa 313  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1727307 caaatattccagagtccaaggttctgaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaa 1727406  T
Q  314 gccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcataactaaccccaaagaacccatgaatatatgtgtacctaagtctgaaattttc 413  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||     
T  1727407 gccacatatcttgaagcctaaagttctgaagaaggaaaagtccttcagagctaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaatttta 1727506  T
Q  414 tatgctacagaaacactttatgggagaaccaacgcttcagtcatggtac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1727507 tatgctacagaaacactttatgggagaaccaacgcttcagtcatggtac 1727555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 201 - 421
Target Start/End: Original strand, 15669120 - 15669337
Alignment:
Q  201 atcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtct 300  Q
    ||||||||||||||||| ||||||  |||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  15669120 atcaaatcaaaaccaaagattccaatgtccaaagttctgaatagtccaaaacctaaagctaataagaattcaaggcctaaaacttttaaaccaaaagtct 15669219  T
Q  301 tgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcataactaaccccaaagaacccatgaatatatgtgtacctaa 400  Q
    | ||||||||||| ||  ||| ||||||||||||||||||   ||||||||| | ||| | ||| ||| |||||| ||||||||| ||||| |||| |||    
T  15669220 tcaatgattctaatccatatagcttgaagcctaaggttct---gaaggaaaaatactttagaacaaacaccaaaggacccatgaaaatatgggtacataa 15669316  T
Q  401 gtctgaaattttctatgctac 421  Q
    |||| ||||||||||||||||    
T  15669317 gtctaaaattttctatgctac 15669337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 13147052 - 13147007
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  13147052 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 13147007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 15841148 - 15841106
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtct 404  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||    
T  15841148 aactaaccccaaaggacccatgaagatatgggtacctaagtct 15841106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 1061476 - 1061431
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  1061476 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 1061431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 12240464 - 12240509
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||||||||||||| ||||| |||||||| ||||||    
T  12240464 aactaacccaaaagaacccatgaagatatgggtacctaaatctgaa 12240509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 18004879 - 18004834
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  18004879 aactaaccccaaaggacccatgaagatatgggtacctaaatctgaa 18004834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 19220144 - 19220251
Alignment:
Q  179 ggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacct 278  Q
    ||||| ||||||||||  ||| | ||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||| ||||||||||||| |     
T  19220144 ggcttcagagtctaagtttctgaacaaatcaaaaccaaatacttcagagtccaaggttctgaagagttcaaaacctaaagctatgaagaattcaagatca 19220243  T
Q  279 aaaacctt 286  Q
    ||||||||    
T  19220244 aaaacctt 19220251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 17234249 - 17234088
Alignment:
Q  10 agaagcaaaggagaatgaattagtttctcagtagaagcacctcttaagaggaagcaggttttggagaaatcaaagaaacatccttgtgctgagttcatac 109  Q
    |||| ||| |||||| ||||| |||||| |  ||||||||||||||||| || |||   | | |||||||||||||||| |||||||  |||||  ||||    
T  17234249 agaaacaacggagaaggaattggtttcttaaaagaagcacctcttaagacgatgcaaaatctagagaaatcaaagaaacctccttgttatgagtgtatac 17234150  T
Q  110 aaaatggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtca 170  Q
    | ||   |||||||||||||||||||||||||| ||| ||| |||||||||| ||| |||||    
T  17234149 agaacaatatgtattcctactttgttccaaaagctggaaaaactaaggttctgaacaagtca 17234088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 17611499 - 17611544
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  17611499 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 17611544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 17780918 - 17780873
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  17780918 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 17780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 22383903 - 22383858
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||| ||||| ||||||||| ||||| |||||||||||||||    
T  22383903 aactaacctcaaaggacccatgaaaatatgggtacctaagtctgaa 22383858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 11450873 - 11451103
Alignment:
Q  75 gaaatcaaagaaacatccttgtgctgagttcatacaaaatggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtcaaag 173  Q
    |||| ||||||||  |||||||  ||||| ||||||||| ||| |||||||| ||||||||||||| | ||  |||||||||||||| ||| ||||| |     
T  11450873 gaaaacaaagaaaactccttgttatgagtgcatacaaaagggtttgtattcccactttgttccaaaggctgaaaaagctaaggttctgaacaagtcagaa 11450972  T
Q  174 tcaagggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaa 273  Q
    ||   | | ||||||||||||| ||| ||||||||||||||||| | ||  ||   |||| |||| || ||||||||||| ||||| | |||  ||||||    
T  11450973 tctgagaccttagagtctaaggttctgatcaaatcaaaaccaaagactcttgaactcaagtttctgaagagttcaaaacccaaagcaaggaaagattcaa 11451072  T
Q  274 gacctaaaacctttaaaccaaaagtcttgaa 304  Q
    |||| ||||| | |||| |||||||||||||    
T  11451073 gaccaaaaacttgtaaatcaaaagtcttgaa 11451103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 305
Target Start/End: Complemental strand, 11543862 - 11543631
Alignment:
Q  75 gaaatcaaagaaacatccttgtgctgagttcatacaaaatggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtcaaag 173  Q
    |||| ||||||||| |||||||  ||||| ||||||||| ||| |||||||| ||||||||||||| | ||  |||||||||||||| ||| ||||| |     
T  11543862 gaaaacaaagaaacctccttgttatgagtgcatacaaaagggtttgtattcccactttgttccaaaggctgaaaaagctaaggttctgaacaagtcagaa 11543763  T
Q  174 tcaagggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaa 273  Q
    ||   | | ||| | ||||||| ||| ||||||||||||||||| | ||  ||   |||| |||  || ||||||||||| ||||  | |||  ||||||    
T  11543762 tctgagaccttacaatctaaggttctgatcaaatcaaaaccaaagactcttgaactcaagtttcagaagagttcaaaacccaaagtaaggaaagattcaa 11543663  T
Q  274 gacctaaaacctttaaaccaaaagtcttgaat 305  Q
    |||| ||||| | |||| ||||||||||||||    
T  11543662 gaccaaaaacttgtaaatcaaaagtcttgaat 11543631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 24832208 - 24832055
Alignment:
Q  264 aagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcataa 363  Q
    ||||| ||||||||  | || |||||| | || ||| |||||||||  ||||  |||| |||||||||||| | | |||| |||||||| ||||| | ||    
T  24832208 aagaaatcaagaccagacacttttaaatctaaggtcctgaatgattaaaagcatcatagcttgaagcctaaaggtatgaaaaaggaaaattcctttagaa 24832109  T
Q  364 ctaaccccaaagaacccatgaatatatgtgtacctaagtctgaaattttctatg 417  Q
    |||||||||||| ||||||||| ||||| ||||| | |||||||||||||||||    
T  24832108 ctaaccccaaagtacccatgaaaatatgggtacccacgtctgaaattttctatg 24832055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 4447191 - 4447123
Alignment:
Q  224 agagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaacc 292  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||||||||||  | |||||||||||||    
T  4447191 agagcccaaggttctaaagagttcaaaacctaaatctaagaagaattcaagatatgaaacctttaaacc 4447123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 20093972 - 20093884
Alignment:
Q  15 caaaggagaatgaattagtttctcagtagaagcacctcttaagaggaagcaggttttggagaaatcaaagaaacatccttgtgctgagt 103  Q
    |||||||||| ||||||||||||||| |||| ||||||||||  ||| | ||||| |  |||||| |||||||| ||||||| ||||||    
T  20093972 caaaggagaaggaattagtttctcagaagaaacacctcttaaatggatgaaggttctacagaaatgaaagaaacctccttgttctgagt 20093884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 13177379 - 13177424
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13177379 aactaaccctaaaggacccatgaagatatgggtacctaagtctgaa 13177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 24804576 - 24804621
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  24804576 aactaaccccaaagaacccatgaagatatgggtacctaagtctgaa 24804621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 4230 - 4275
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  4230 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 4275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 12613 - 12658
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  12613 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 12658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 2629 - 2674
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  2629 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 2674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 23802629 - 23802576
Alignment:
Q  354 tccttcataactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||| |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23802629 tcctccataactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23802576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 3840871 - 3840826
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  3840871 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 3840826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 23790574 - 23790529
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23790574 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23790529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 19162628 - 19162673
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  19162628 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 19162673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 22652581 - 22652536
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  22652581 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 22652536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 112902 - 112857
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  112902 aactaacccaaaagtacccatgaagatatgggtacctaagtctgaa 112857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 13531111 - 13531066
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13531111 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 13531066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 23486016 - 23485971
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| || |||||| ||||| |||||||||||||||    
T  23486016 aactaaccccaaaggacacatgaagatatgggtacctaagtctgaa 23485971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 25182199 - 25182244
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||||| ||||||||| ||||| |||||||||| ||||    
T  25182199 aactaaccccaaaggacccatgaagatatgcgtacctaagtttgaa 25182244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 1346 - 1390
Alignment:
Q  362 aactaaccccaaagaacccatgaatatatgtgtacctaagtctga 406  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  1346 aactaacccaaaaggacccatgaagatatgggtacctaagtctga 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 197622 - 197574
Alignment:
Q  359 cataactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  197622 cataactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 197574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 135639 - 135591
Alignment:
Q  359 cataactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 407  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  135639 cataactaaccctaaaggacccatgaagatatgggtacctaaatctgaa 135591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University