View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13896_high_11 (Length: 471)
Name: NF13896_high_11
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 55643182 - 55643643
Alignment:
| Q |
1 |
tcttggtgatctatagttaaaggcagccaatattcctagttcatagtcaaagtagctaatattctcattacaagattcattacgcat-tgggtaaaggta |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
55643182 |
tcttggtgatctatagttaaaggcagctaatattcaaagttcatagtcaaagtagctaatattctcattataagattcattacgcacgtgggtaaaggta |
55643281 |
T |
|
| Q |
100 |
acattttcatttggtatgataaatgtcattcttatgatcgtttttgtgatagagtttatgttgaacaaaatgattttaatctttacattaacgaagtatg |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
55643282 |
acatttttatttggtatgataaatgtcattcttatgatcgtttttgtgatagagttcatgttaaacaaaatgattttaatttttacattaacgaaatatg |
55643381 |
T |
|
| Q |
200 |
tcataacggggtatgaaattttgatctcctcttcttcaagatgttaaaatggagatggaaagtatttt-ttaccaataccgacatttatgatatcattgt |
298 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55643382 |
tcataacggggtataaaattttgatctcctcttcttcaagatgttaaaatggagatggaatgtatttttttaccaataccgacatttatgatatcattgt |
55643481 |
T |
|
| Q |
299 |
gtgagagtcacctatttcaaatatatataccactaaatccacctattattagtaagctcttctatcaggtcccaatctaaaggtggttttgacctgaacc |
398 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55643482 |
atgagagtcacctatttcaaatacatataccactaaatccgcctattattagtaagctcttctatcaggtcccaatctgaaggtggttttgacctgaacc |
55643581 |
T |
|
| Q |
399 |
aaatttaaaaacttaaactcttaaaccaaaaatacatttgaatacttaagtgttgatcttga |
460 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||| |
|
|
| T |
55643582 |
aaatttaaaaacttaaactctttgaccaaaaatacatttgaatgcgttagtgttgatcttga |
55643643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University