View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13896_high_13 (Length: 391)
Name: NF13896_high_13
Description: NF13896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13896_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 45 - 377
Target Start/End: Original strand, 1083768 - 1084100
Alignment:
| Q |
45 |
taaaaatggcctatggaaagaggaagattgtgtatttaccttgttagagtccgatgcacaaaatccacattttggtgaagcctttaaacacgttgtgcag |
144 |
Q |
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| T |
1083768 |
taaaaatggcctatggaaagaggaagattgcatatttaccttgttagagtcagatgcacaaaatccacattttggtgaagcctttaaacacgttgtgcag |
1083867 |
T |
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| Q |
145 |
tcccatccgccacgagaaggagtaaaagcaggacaagtgttgttgaaacgataagtttctatttcacttatcattggagaatgagtttcggtttgtcgga |
244 |
Q |
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| T |
1083868 |
tcccatccgccacgagaaggagtaaaagcaggacaggtgttgttgaaacgataagtttctatttcacttatcattggagaatgagtttcggtttgtcgga |
1083967 |
T |
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| Q |
245 |
aagtgacagtaagaagcacaagtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataag |
344 |
Q |
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| T |
1083968 |
aagtgacagtaagaagcacaagtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcaatgaaatatatgcttataag |
1084067 |
T |
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| Q |
345 |
cgaaccaaacgcattcaacccagcagtgataag |
377 |
Q |
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| T |
1084068 |
cgaaccaaacgtattcaacccagcagtgataag |
1084100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 137 - 377
Target Start/End: Complemental strand, 33116552 - 33116312
Alignment:
| Q |
137 |
ttgtgcagtcccatccgccacgagaaggagtaaaagcaggacaagtgttgttgaaacgataagtttctatttcacttatcattggagaatgagtttcggt |
236 |
Q |
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| T |
33116552 |
ttgtgcagtcccatccgccacgagaaggagtaaaagcaggacaggtgttgttgaaatgataagtttctatttcacttatcattggagaatgagtttcggt |
33116453 |
T |
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| Q |
237 |
ttgtcggaaagtgacagtaagaagcacaagtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatg |
336 |
Q |
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| T |
33116452 |
ttgtcagaaagtgacagtaagaagcacaagtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatg |
33116353 |
T |
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| Q |
337 |
cttataagcgaaccaaacgcattcaacccagcagtgataag |
377 |
Q |
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| T |
33116352 |
cttataagagaaccaaacgcattcaacccagcagtgataag |
33116312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 33116618 - 33116549
Alignment:
| Q |
19 |
atcatgcaaagtttatggaaataagttaaaaatggcctatggaaagaggaagattgtgtatttaccttgt |
88 |
Q |
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| T |
33116618 |
atcatgcaaattttatggaaatgagttaaaaatggcctatggaaagaggaagattgcatatttaccttgt |
33116549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 21492446 - 21492499
Alignment:
| Q |
285 |
caaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgct |
338 |
Q |
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| T |
21492446 |
caaactaatcaatgcaagtttcttcctcccagttttgtcgatgaaatatatgct |
21492499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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